Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f24
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0973 - 9803378-9803724,9804057-9804163,9804208-9804443,980...    32   0.44 
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    29   4.1  
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134...    29   5.4  
10_07_0160 - 13656172-13656476,13656799-13657528                       28   7.2  
02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456...    28   7.2  
07_01_1184 - 11251376-11251499,11251583-11251881                       28   9.5  

>12_01_0973 -
           9803378-9803724,9804057-9804163,9804208-9804443,
           9804513-9804799,9806226-9806331
          Length = 360

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +3

Query: 450 LGLQSSYLNMMLLAHKSLCINTLNPSLTTVKLSQASINNFTILFSNSGKPT 602
           LGL+ SY+++  L H +  +   N ++T VK  +A+I N  ++  ++ +PT
Sbjct: 277 LGLEQSYVHLSSLQHLTFYLCCTNATITDVKAVEATIRN--VISIHTRRPT 325


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 640  CISDILNTFSAKYVGLPELENSIVKLFIEACDSLTV 533
            C+ ++  T  +  V +P+L  S+ +LFI++C +L V
Sbjct: 1874 CLEELNITSCSGIVEIPKLPASLEELFIQSCQNLVV 1909


>02_01_0201 -
           1347868-1347925,1348040-1348135,1348447-1348523,
           1349385-1349453,1349576-1349629,1350295-1350350,
           1350487-1350694,1350978-1351066,1351163-1351187
          Length = 243

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 478 MFKYEDCNPNNAVIIDYQCIRYSAPTFDVMTFLYLTTSKSFRQQHETGIFEHYYTIFSKH 299
           +F+    +P   V ID  CI  +  +  +    Y+T     + Q   G+F++   +F+  
Sbjct: 115 VFRSGTRHPQPRVPID-SCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATD 173

Query: 298 LNENTKLRL-KRIGYNWEEFLKSC 230
           L+  T LRL K +G    +F  SC
Sbjct: 174 LHSRTFLRLPKTLGV---DFRASC 194


>10_07_0160 - 13656172-13656476,13656799-13657528
          Length = 344

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
 Frame = +1

Query: 4   FFINIFPRIPQTI-------LPVSPGIHCRSSRSVLKGQTYLRSYASERFPD 138
           FF+++   +P ++       L +SP I CRS+R +    TY +S +S  F D
Sbjct: 54  FFLSLLSPLPASVSSSLSSPLSISPSI-CRSARLLCPNSTYFQSLSSTVFID 104


>02_04_0050 -
           19245087-19245113,19245306-19245449,19245546-19245637,
           19245733-19245811,19245902-19245968,19246084-19246175,
           19246267-19246383,19246472-19246583,19246884-19246990,
           19247113-19247189,19247351-19247432,19247526-19247663,
           19248176-19248234,19249155-19249233
          Length = 423

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 432 SMITALLGLQSSYLNMMLLAHKSLCINTLNPSLTTVKLS 548
           +++T L+GLQ  ++ +    HK   IN L PS + + L+
Sbjct: 292 AIVTCLIGLQFGHIIIHFEKHKGRIINWLIPSFSMLALA 330


>07_01_1184 - 11251376-11251499,11251583-11251881
          Length = 140

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 589 ELENSIVKLFIEACDS----LTVVKDGFNVLIHKDLWAN 485
           EL   +V LF+  C        ++KDGF+  + K  W N
Sbjct: 101 ELSGYLVSLFMRTCRDEGIQFPILKDGFSYEVRKHFWHN 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,990
Number of Sequences: 37544
Number of extensions: 370633
Number of successful extensions: 876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)