Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f24
(774 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ975380-1|ABM44413.1| 123|Homo sapiens egl nine-like protein 1... 32 2.6
BC005369-1|AAH05369.1| 128|Homo sapiens EGLN1 protein protein. 32 2.6
AL445524-1|CAH72105.1| 426|Homo sapiens egl nine homolog 1 (C. ... 32 2.6
AL117352-1|CAI23092.1| 426|Homo sapiens egl nine homolog 1 (C. ... 32 2.6
AJ310543-1|CAC42509.1| 426|Homo sapiens EGLN1 protein protein. 32 2.6
AF246631-1|AAG34568.1| 426|Homo sapiens SM-20 protein. 32 2.6
AF229245-1|AAG33965.1| 426|Homo sapiens SM-20 protein. 32 2.6
BC011414-1|AAH11414.1| 505|Homo sapiens C5orf3 protein protein. 31 4.6
AK024664-1|BAB14952.1| 505|Homo sapiens protein ( Homo sapiens ... 31 4.6
AF159700-1|AAF76523.1| 505|Homo sapiens unknown protein. 31 4.6
>DQ975380-1|ABM44413.1| 123|Homo sapiens egl nine-like protein 1
transcript variant 2 protein.
Length = 123
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 54 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 96
>BC005369-1|AAH05369.1| 128|Homo sapiens EGLN1 protein protein.
Length = 128
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 54 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 96
>AL445524-1|CAH72105.1| 426|Homo sapiens egl nine homolog 1 (C.
elegans) protein.
Length = 426
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394
>AL117352-1|CAI23092.1| 426|Homo sapiens egl nine homolog 1 (C.
elegans) protein.
Length = 426
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394
>AJ310543-1|CAC42509.1| 426|Homo sapiens EGLN1 protein protein.
Length = 426
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394
>AF246631-1|AAG34568.1| 426|Homo sapiens SM-20 protein.
Length = 426
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394
>AF229245-1|AAG33965.1| 426|Homo sapiens SM-20 protein.
Length = 426
Score = 31.9 bits (69), Expect = 2.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 175 RYKDIYPKLEKYQTF*SFR-NSSKIPPSCSRFFSISIWYFHLD 300
++ DI PK ++ F S R N ++ P+ + ++I++WYF D
Sbjct: 352 QFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDAD 394
>BC011414-1|AAH11414.1| 505|Homo sapiens C5orf3 protein protein.
Length = 505
Score = 31.1 bits (67), Expect = 4.6
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -3
Query: 742 ILNGRSEYNFYKQHEHLLNEPTFKDCPWLRAAAKCISDILNTFSAKYVGLPELENSIVKL 563
+L+GR + + L++ T C L + +K + L T K + L I +
Sbjct: 400 VLHGRKQEVTAIERSQTLSQMTIVLCKELSSLSKEFTTCLTTAGVKEMA-DVLNPLITAV 458
Query: 562 FIEACDSLTVVKDGFNVLI 506
F+EA +S + ++D F +L+
Sbjct: 459 FLEASNSASYIQDAFQLLL 477
>AK024664-1|BAB14952.1| 505|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21011 fis, clone CAE04289. ).
Length = 505
Score = 31.1 bits (67), Expect = 4.6
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -3
Query: 742 ILNGRSEYNFYKQHEHLLNEPTFKDCPWLRAAAKCISDILNTFSAKYVGLPELENSIVKL 563
+L+GR + + L++ T C L + +K + L T K + L I +
Sbjct: 400 VLHGRKQEVTAIERSQTLSQMTIVLCKELSSLSKEFTTCLTTAGVKEMA-DVLNPLITAV 458
Query: 562 FIEACDSLTVVKDGFNVLI 506
F+EA +S + ++D F +L+
Sbjct: 459 FLEASNSASYIQDAFQLLL 477
>AF159700-1|AAF76523.1| 505|Homo sapiens unknown protein.
Length = 505
Score = 31.1 bits (67), Expect = 4.6
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = -3
Query: 742 ILNGRSEYNFYKQHEHLLNEPTFKDCPWLRAAAKCISDILNTFSAKYVGLPELENSIVKL 563
+L+GR + + L++ T C L + +K + L T K + L I +
Sbjct: 400 VLHGRKQEVTAIERSQTLSQMTIVLCKELSSLSKEFTTCLTTAGVKEMA-DVLNPLITAV 458
Query: 562 FIEACDSLTVVKDGFNVLI 506
F+EA +S + ++D F +L+
Sbjct: 459 FLEASNSASYIQDAFQLLL 477
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,547,873
Number of Sequences: 237096
Number of extensions: 2077860
Number of successful extensions: 5736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5736
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -