Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f24
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   4.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.2  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   5.5  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   5.5  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   5.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 376 LTTSKSFRQQHETGIFEHYYTIFSKHLNENTKLRLKRI 263
           L +++++  +H T  F  Y    S +L E TK+ L  I
Sbjct: 380 LGSTETYYSKHNTQQFTQYIPESSSNLQEKTKIDLLEI 417



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 661 WLRAAAKCISDILNTFSAKYV 599
           W R +A C+S I N  S   V
Sbjct: 25  WFRISAGCVSRISNRISRNRV 45


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 697 VRVVCKNCIH 726
           VR  C+NCIH
Sbjct: 31  VRAFCRNCIH 40


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 697 VRVVCKNCIH 726
           VR  C+NCIH
Sbjct: 479 VRAFCRNCIH 488


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 760 NYETKNILNGRSEYNFYKQHEHLLN 686
           NY   N  N  + YN YK+  + +N
Sbjct: 90  NYSNYNNYNNNNNYNNYKKLYYNIN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,763
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)