Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f18
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    29   1.4  
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    27   4.2  
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64...    27   5.6  
03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    26   9.8  

>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 82   YINLYIFFSYTYTEFGRLDSIERSLSREQFVKKPYPWN 195
            Y +L + + ++   F +LDS E S    +F+K+ Y W+
Sbjct: 1874 YRHLDLLYYFSTQIFWKLDSTETSSRMRRFMKRNYKWS 1911


>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
            33057488-33057538,33057623-33057695,33058229-33058333,
            33060124-33060206,33061209-33061249,33061659-33063120,
            33063368-33064847,33064958-33065122,33065232-33065424,
            33065502-33065613,33065702-33065849,33065951-33066148,
            33066234-33066512,33066612-33066773,33066872-33067090,
            33067481-33067612
          Length = 1861

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 27   NKIKTL-HTALIFANNVYNIH*FIYI 101
            N+ K L  ++ +F N  YNIH F+YI
Sbjct: 1229 NEFKLLSESSFVFENITYNIHDFLYI 1254


>06_01_0081 +
           646100-646346,646432-646848,647067-647170,648152-648352,
           649088-649798,649944-650674,650942-651017,651096-651182,
           651429-651517,651917-651973,652402-652510,652590-652649,
           652835-652919,653178-653242,653694-653753,653869-653913,
           654697-654800,654877-655099
          Length = 1156

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 11  YLQXLQQNKNITYSVNIRKQCLQYTLIYIYFFRIRTQSSVDWIQSSEVCLVNNLLKNLIR 190
           YL+ L  +KNI Y  NI+     Y L+  + F+    S ++ + S    ++ +L KNL  
Sbjct: 225 YLK-LHGSKNICYQRNIKWLMFFYLLLCNFLFKAYGISRMNLVPSLMEIILPSLEKNLSW 283

Query: 191 G 193
           G
Sbjct: 284 G 284


>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 333 LIDII*MCY-FTN*RWSNMLIVNYY 262
           L D++  CY     RW+N+L V+YY
Sbjct: 295 LTDMVNTCYGAAGNRWANLLAVDYY 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,765,670
Number of Sequences: 37544
Number of extensions: 131305
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)