Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f18
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical p...    27   5.0  
AC024204-3|AAF36041.1|  330|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    26   6.6  
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       26   6.6  
Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical
           protein F57B1.1 protein.
          Length = 299

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 3   SXPIYXFYNKIKTLHTALIFANNVYNIH*FIYIFFVYVH 119
           S   Y   N I   H A++F+N +  IH  +++FF   H
Sbjct: 67  SASFYYMSNVIDFCHNAILFSNLIIAIH-RMFVFFFKKH 104


>AC024204-3|AAF36041.1|  330|Caenorhabditis elegans Hypothetical
           protein Y73B6A.2 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 97  IFFSYTYTEFGRLDSIERSLSREQFVKKPYPWNLIRGS 210
           I F+      GR+D +   L     +KKP PW  + G+
Sbjct: 169 IDFAIAQKFIGRVDDLYSLLYMTAELKKPLPWTYLEGN 206


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 88  NLYIFFSYTYTEFGR--LDSIERSLSREQFVKKPYPWNLIRGSMQTTHASKNCNY*VNK 258
           N ++F  Y  + + R  LD+++   +R+   +   P NL+  S  T+   K C + V K
Sbjct: 114 NGFVFSEYVVSHYTRQLLDALDYCHTRKIVHRDVRPHNLVLASKDTSAPLKLCGFGVAK 172


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 88  NLYIFFSYTYTEFGR--LDSIERSLSREQFVKKPYPWNLIRGSMQTTHASKNCNY*VNK 258
           N ++F  Y  + + R  LD+++   +R+   +   P NL+  S  T+   K C + V K
Sbjct: 114 NGFVFSEYVVSHYTRQLLDALDYCHTRKIVHRDVRPHNLVLASKDTSAPLKLCGFGVAK 172


>Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical
           protein T02E1.6 protein.
          Length = 244

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 EFGRLDSIERSLSREQFVKKPYPW 192
           +FGRL+ +E +L+ +   + PY W
Sbjct: 163 QFGRLNVVEEALNEDIRFRIPYEW 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,316,817
Number of Sequences: 27780
Number of extensions: 136449
Number of successful extensions: 312
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)