Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f18
(354 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 26 0.11
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 24 0.61
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 1.4
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 22 2.5
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 4.3
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 5.7
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 21 5.7
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 5.7
S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor prot... 20 7.5
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 20 7.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 9.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 9.9
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 20 9.9
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 20 9.9
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 20 9.9
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 20 9.9
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 26.2 bits (55), Expect = 0.11
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 85 INLYIFFSYTYTEFGRLDSIERSLSREQFVKKPYPWNLIR 204
++LY E G LD I +LSRE KK Y +LI+
Sbjct: 1013 LDLYRQEKEEMVELGVLDKIFLALSRESGFKKTYVQDLIQ 1052
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 23.8 bits (49), Expect = 0.61
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +1
Query: 166 QFVKKPYPWNLIRGSMQTTHASKNCNY*VNKRIIIYYQHVTPPLISKVTHSNYIY*NKT 342
+F+K P P N++ S+ + +N +N + Y + V SN++ +T
Sbjct: 187 RFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRT 245
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.6 bits (46), Expect = 1.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 182 GFLTNCSRDRLRSIESNRPNSVYVYEKNIYKLMYIVDIV 66
GFLT+CS D L N + ++ I+ Y + ++
Sbjct: 192 GFLTSCSFDYLTD-----TNEIRIFVATIFTFSYCIPMI 225
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 21.8 bits (44), Expect = 2.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 2 IXPYLQXLQQNKNITYSVNIRKQCLQYTLIYIYFFRIR--TQSSVDWIQSS 148
I Y L+ +K TY N + CL+ Y + R+ Q +++W + S
Sbjct: 141 IDSYKSNLKCDKCSTYQSNGEEVCLENCTGYQQYLRLLEVPQINLEWGEGS 191
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.0 bits (42), Expect = 4.3
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = -3
Query: 202 ELSSTDKVF*QIVHETDFARLNPIDRTLCTYTKKIYIN 89
E S K+ + + +++ N + Y KK+Y N
Sbjct: 74 ERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYN 111
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 20.6 bits (41), Expect = 5.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 182 GFLTNCSRDRLRSIESNR 129
GFLT CS D L E +
Sbjct: 201 GFLTTCSFDFLTDDEDTK 218
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 20.6 bits (41), Expect = 5.7
Identities = 5/15 (33%), Positives = 9/15 (60%)
Frame = -2
Query: 242 LQFFDAWVVCMDPRI 198
L + W+ C+DP +
Sbjct: 586 LAVYGVWINCLDPNL 600
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 5.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 182 GFLTNCSRDRLRSIESNR 129
GFLT CS D L E +
Sbjct: 201 GFLTTCSFDFLTDDEDTK 218
>S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor
protein.
Length = 169
Score = 20.2 bits (40), Expect = 7.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 99 IFFVYVHRVRSIGFNRAKSVS 161
+FF+YVH + + K VS
Sbjct: 134 LFFIYVHPSATFSLDLNKVVS 154
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.2 bits (40), Expect = 7.5
Identities = 10/40 (25%), Positives = 17/40 (42%)
Frame = +2
Query: 32 NKNITYSVNIRKQCLQYTLIYIYFFRIRTQSSVDWIQSSE 151
NK + Y++N +Q + IY+ + WI E
Sbjct: 323 NKKLYYNINYIEQIPVPVPVPIYYGNFPPRPMGPWISMQE 362
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 9.9
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 38 NITYSVNIRKQCLQYTL 88
+IT+++ +R++ L YT+
Sbjct: 233 DITFNITMRRKTLFYTV 249
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 9.9
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 38 NITYSVNIRKQCLQYTL 88
+IT+++ +R++ L YT+
Sbjct: 233 DITFNITMRRKTLFYTV 249
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 19.8 bits (39), Expect = 9.9
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 38 NITYSVNIRKQCLQYTL 88
+IT+++ +R++ L YT+
Sbjct: 229 DITFNITMRRKTLFYTV 245
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 19.8 bits (39), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -2
Query: 170 NCSRDRLRSIESNR 129
+CSRDR R + +R
Sbjct: 252 SCSRDRSREYKKDR 265
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 19.8 bits (39), Expect = 9.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -2
Query: 176 LTNCSRDRLRSIESN 132
LT+C R L ESN
Sbjct: 171 LTDCLRSELAQCESN 185
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 19.8 bits (39), Expect = 9.9
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 38 NITYSVNIRKQCLQYTL 88
+IT+++ +R++ L YT+
Sbjct: 238 DITFNITMRRKTLFYTV 254
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,166
Number of Sequences: 438
Number of extensions: 1964
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8184330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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