Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f16
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 31 0.35
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 28 4.3
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 4.3
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 27 5.7
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 27 5.7
12_02_0076 + 13284747-13285434,13285507-13285829 27 10.0
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 27 10.0
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 27 10.0
03_02_0573 - 9571040-9571234,9571352-9571444,9571735-9571818,957... 27 10.0
>06_03_0590 +
22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 114 LCKN*CPILSRLCCNTDSRRNFFLCLVPTAISGLQHRIVFHRSNTSYNLCS 266
LC C IL +C T+ R LC + +SG R + SNTS N CS
Sbjct: 17 LCTFFCSILLAICNETEYDRQALLCF-KSQLSG-PSRALSSWSNTSLNFCS 65
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 228 VFHRSNTSYNLCSRKVSVSFWITQSCTIELREYDTKY 338
V H ++ YN C R SV WI + R+Y ++
Sbjct: 56 VSHLNDRCYNFCVRDKSVGLWIYNLRSYICRDYHMRF 92
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 264 SRKVSVSFWITQSCTIELREYDTKYTGVLYMRELIYNA 377
+R V+ T+ CTIEL D + L+ +E +NA
Sbjct: 835 TRMQEVALLATKKCTIELAPLDAHCSWQLFCKEAFWNA 872
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 153 NKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLD 55
+K W+ WD+++ KE G S GV H D
Sbjct: 335 DKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPD 367
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 153 NKAWKGWDINSYKEHPNHHGEPLSYRGVYIHLD 55
+K W+ WD+++ KE G S GV H D
Sbjct: 335 DKTWRLWDVSTGKELLLQEGHSRSVYGVSFHPD 367
>12_02_0076 + 13284747-13285434,13285507-13285829
Length = 336
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 165 CPYCNKAWKGWDINSYKEHPNHHGEPLSY 79
C YC++ KG K H H G+ ++Y
Sbjct: 21 CKYCHQRKKGGGATRLKMHLGHKGKGVTY 49
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 220 CCRPEIAVGTRQRKKLRLLSVLQQ-SLERMGHQFLQ 116
CC ++ G Q L+LL + + ++ER+GH+FLQ
Sbjct: 609 CCT-KLPDGLCQLSCLKLLQIRRAPAIERIGHEFLQ 643
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -1
Query: 322 SRNSIVQL*--VIQNET--ETLRLQRL*DVFDL*NTIRCCRPEI 203
S S+V+L +++N T ET+ L + DV DL N RCC I
Sbjct: 429 SATSMVELTCHILENTTSLETITLDAVCDVHDLENIGRCCTTTI 472
>03_02_0573 -
9571040-9571234,9571352-9571444,9571735-9571818,
9572401-9572480,9572609-9572759,9573067-9573579
Length = 371
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 46 AYKVQVNIDAAITQRFPVMVRMFFVRIDVPSFPGFVAIRTVD 171
A V V+ AA ++R PV VR +R+ V GFV VD
Sbjct: 84 ASSVVVSAAAAASRRLPVGVRKPPLRVVVTGGAGFVGSHLVD 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,989
Number of Sequences: 37544
Number of extensions: 207359
Number of successful extensions: 544
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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