Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f16
(469 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017096-1|AAH17096.1| 302|Homo sapiens alkB, alkylation repair... 49 7e-06
BC002820-1|AAH02820.1| 302|Homo sapiens alkB, alkylation repair... 49 7e-06
AK222689-1|BAD96409.1| 302|Homo sapiens hypothetical protein FL... 49 7e-06
AK000020-1|BAA90888.1| 302|Homo sapiens protein ( Homo sapiens ... 49 7e-06
AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein. 29 6.1
U18549-1|AAA91631.1| 362|Homo sapiens protein ( Human GPR6 G pr... 29 8.0
L36150-1|AAA63181.1| 362|Homo sapiens G protein-coupled recepto... 29 8.0
BC126301-1|AAI26302.1| 362|Homo sapiens G protein-coupled recep... 29 8.0
BC117298-1|AAI17299.1| 362|Homo sapiens G protein-coupled recep... 29 8.0
BC043414-1|AAH43414.1| 362|Homo sapiens G protein-coupled recep... 29 8.0
AL591076-1|CAI17125.1| 362|Homo sapiens G protein-coupled recep... 29 8.0
>BC017096-1|AAH17096.1| 302|Homo sapiens alkB, alkylation repair
homolog 4 (E. coli) protein.
Length = 302
Score = 49.2 bits (112), Expect = 7e-06
Identities = 30/92 (32%), Positives = 43/92 (46%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINSYKEHPNHH 97
R CGCKG RTCLICE Q G + ++YC + GW + + E +
Sbjct: 13 RECGCKGIRTCLICERQRG-SDPPWELPPAKTYRFIYC-----SDTGWAVGT--EESDFE 64
Query: 96 GEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
G + GV + DF++ EE L+ +D P
Sbjct: 65 GWAFPFPGVMLIEDFVTREEEAELVRLMDRDP 96
>BC002820-1|AAH02820.1| 302|Homo sapiens alkB, alkylation repair
homolog 4 (E. coli) protein.
Length = 302
Score = 49.2 bits (112), Expect = 7e-06
Identities = 30/92 (32%), Positives = 43/92 (46%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINSYKEHPNHH 97
R CGCKG RTCLICE Q G + ++YC + GW + + E +
Sbjct: 13 RECGCKGIRTCLICERQRG-SDPPWELPPAKTYRFIYC-----SDTGWAVGT--EESDFE 64
Query: 96 GEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
G + GV + DF++ EE L+ +D P
Sbjct: 65 GWAFPFPGVMLIEDFVTREEEAELVRLMDRDP 96
>AK222689-1|BAD96409.1| 302|Homo sapiens hypothetical protein
FLJ20013 variant protein.
Length = 302
Score = 49.2 bits (112), Expect = 7e-06
Identities = 30/92 (32%), Positives = 43/92 (46%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINSYKEHPNHH 97
R CGCKG RTCLICE Q G + ++YC + GW + + E +
Sbjct: 13 RECGCKGIRTCLICERQRG-SDPPWELPPAKTYRFIYC-----SDTGWAVGT--EESDFE 64
Query: 96 GEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
G + GV + DF++ EE L+ +D P
Sbjct: 65 GWAFPFPGVMLIEDFVTREEEAELVRLMDRDP 96
>AK000020-1|BAA90888.1| 302|Homo sapiens protein ( Homo sapiens
cDNA FLJ20013 fis, clone ADKA03455. ).
Length = 302
Score = 49.2 bits (112), Expect = 7e-06
Identities = 30/92 (32%), Positives = 43/92 (46%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINSYKEHPNHH 97
R CGCKG RTCLICE Q G + ++YC + GW + + E +
Sbjct: 13 RECGCKGIRTCLICERQRG-SDPPWELPPAKTYRFIYC-----SDTGWAVGT--EESDFE 64
Query: 96 GEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
G + GV + DF++ EE L+ +D P
Sbjct: 65 GWAFPFPGVMLIEDFVTREEEAELVRLMDRDP 96
>AF010403-1|AAC51734.1| 5262|Homo sapiens ALR protein.
Length = 5262
Score = 29.5 bits (63), Expect = 6.1
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = -2
Query: 264 CKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINSYKE 112
CK CR C C GA ++Y C C+KA G I S E
Sbjct: 317 CKACRVCRAC----GAGSAELNPNSEWFENYSLCHRCHKAQGGQTIRSVAE 363
>U18549-1|AAA91631.1| 362|Homo sapiens protein ( Human GPR6 G
protein-coupled receptor gene, complete cds. ).
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
>L36150-1|AAA63181.1| 362|Homo sapiens G protein-coupled receptor
protein.
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
>BC126301-1|AAI26302.1| 362|Homo sapiens G protein-coupled receptor
6 protein.
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
>BC117298-1|AAI17299.1| 362|Homo sapiens G protein-coupled receptor
6 protein.
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
>BC043414-1|AAH43414.1| 362|Homo sapiens G protein-coupled receptor
6 protein.
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
>AL591076-1|CAI17125.1| 362|Homo sapiens G protein-coupled receptor
6 protein.
Length = 362
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 438 TMVRTLISQHVSILFNLLFM*HYILVHAY-KVPQCI*YHIHVIQL 307
++VR L HV++L FM I++H Y ++ Q + H H I L
Sbjct: 217 SVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIAL 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,151,100
Number of Sequences: 237096
Number of extensions: 1138535
Number of successful extensions: 2307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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