Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f16
(469 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122185-1|AAM52697.1| 310|Drosophila melanogaster LD42289p pro... 71 8e-13
AE014134-1700|AAF52815.1| 304|Drosophila melanogaster CG4036-PA... 71 8e-13
BT021254-1|AAX33402.1| 115|Drosophila melanogaster RE59362p pro... 31 0.78
BT001425-1|AAN71180.1| 120|Drosophila melanogaster GH14831p pro... 31 0.78
AE014134-1699|AAF52814.2| 93|Drosophila melanogaster CG18854-P... 31 0.78
AE014134-1698|AAG22425.1| 93|Drosophila melanogaster CG18854-P... 31 0.78
AE014134-1697|AAN10708.1| 120|Drosophila melanogaster CG18854-P... 31 0.78
AE013599-3878|AAF47210.1| 706|Drosophila melanogaster CG13579-P... 26 1.7
AE014296-3030|AAF49254.2| 535|Drosophila melanogaster CG18233-P... 29 2.4
AY070885-1|AAL48507.1| 350|Drosophila melanogaster LD29420p pro... 28 5.5
AE014134-343|AAF51301.1| 350|Drosophila melanogaster CG11723-PA... 28 5.5
>AY122185-1|AAM52697.1| 310|Drosophila melanogaster LD42289p
protein.
Length = 310
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINS-YKEHPNH 100
RPCGCKG RTCL CE + A +++ YC C+ +GWD N K+H NH
Sbjct: 11 RPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQRGWDTNHVQKDHENH 70
Query: 99 -HGEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
E L G+ + +F+S E LI ++D++P
Sbjct: 71 KKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLP 104
>AE014134-1700|AAF52815.1| 304|Drosophila melanogaster CG4036-PA
protein.
Length = 304
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Frame = -2
Query: 276 RPCGCKGCRTCLICETQYGAAXXXXXXXXXXXKSYVYCPYCNKAWKGWDINS-YKEHPNH 100
RPCGCKG RTCL CE + A +++ YC C+ +GWD N K+H NH
Sbjct: 5 RPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQRGWDTNHVQKDHENH 64
Query: 99 -HGEPLSYRGVYIHLDFISELEEQILIDNIDEIP 1
E L G+ + +F+S E LI ++D++P
Sbjct: 65 KKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLP 98
>BT021254-1|AAX33402.1| 115|Drosophila melanogaster RE59362p
protein.
Length = 115
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 270 CGCKGCRTCLICETQYGAA 214
CGC G RTCL CE + A
Sbjct: 29 CGCMGVRTCLSCEQDFQVA 47
>BT001425-1|AAN71180.1| 120|Drosophila melanogaster GH14831p
protein.
Length = 120
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 270 CGCKGCRTCLICETQYGAA 214
CGC G RTCL CE + A
Sbjct: 34 CGCMGVRTCLSCEQDFQVA 52
>AE014134-1699|AAF52814.2| 93|Drosophila melanogaster CG18854-PB,
isoform B protein.
Length = 93
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 270 CGCKGCRTCLICETQYGAA 214
CGC G RTCL CE + A
Sbjct: 7 CGCMGVRTCLSCEQDFQVA 25
>AE014134-1698|AAG22425.1| 93|Drosophila melanogaster CG18854-PA,
isoform A protein.
Length = 93
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 270 CGCKGCRTCLICETQYGAA 214
CGC G RTCL CE + A
Sbjct: 7 CGCMGVRTCLSCEQDFQVA 25
>AE014134-1697|AAN10708.1| 120|Drosophila melanogaster CG18854-PC,
isoform C protein.
Length = 120
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 270 CGCKGCRTCLICETQYGAA 214
CGC G RTCL CE + A
Sbjct: 34 CGCMGVRTCLSCEQDFQVA 52
>AE013599-3878|AAF47210.1| 706|Drosophila melanogaster CG13579-PA
protein.
Length = 706
Score = 26.2 bits (55), Expect(2) = 1.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 123 SYKEHPNHHGEP 88
S+ HPNHHG P
Sbjct: 287 SHPNHPNHHGHP 298
Score = 22.2 bits (45), Expect(2) = 1.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 111 HPNHHGEPL 85
HP+HHG P+
Sbjct: 297 HPHHHGPPV 305
>AE014296-3030|AAF49254.2| 535|Drosophila melanogaster CG18233-PA
protein.
Length = 535
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 78 DNSTVPRDGSDVLCKN*CPILSRLCCNTDSRRNFFLCLVP---TAISGLQHRIVFH 236
D+ST P ++ C+ P S L C +S N FL L P IS + ++FH
Sbjct: 274 DDSTTPPTDHNLGCRGLFPKKSNLVCRYNSSTNAFLKLAPLKMEEISRDPYIVMFH 329
>AY070885-1|AAL48507.1| 350|Drosophila melanogaster LD29420p
protein.
Length = 350
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 231 FHRSNTSYNLCSRKVSVSFWITQSCTIE 314
+H SN+SY + SRK SF S +E
Sbjct: 312 YHLSNSSYQISSRKTPTSFDYVDSSMVE 339
>AE014134-343|AAF51301.1| 350|Drosophila melanogaster CG11723-PA
protein.
Length = 350
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 231 FHRSNTSYNLCSRKVSVSFWITQSCTIE 314
+H SN+SY + SRK SF S +E
Sbjct: 312 YHLSNSSYQISSRKTPTSFDYVDSSMVE 339
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,684,306
Number of Sequences: 53049
Number of extensions: 366530
Number of successful extensions: 1857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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