Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f14
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0071 - 14652607-14653716                                         31   0.69 
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    31   1.2  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    28   8.5  

>10_08_0071 - 14652607-14653716
          Length = 369

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -1

Query: 666 LIEGVVVAAQSFVGELLFFFCSGKIIKRWGYGTTLTFSLF-----CYGIRMALISFIRNP 502
           + E ++VAA  +  E L   C  ++ K  G GT +          C G++ A   F+R+P
Sbjct: 272 MCEHLLVAADRYNLERLKLICEERLCKYIGIGTVMDILALADQHHCKGLKKACFDFLRSP 331

Query: 501 WQLVLIEG 478
             L  + G
Sbjct: 332 ANLSAVTG 339


>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -1

Query: 630 VGELLFFFCSGKIIKRWGYG--TTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTY 457
           VGE+L F+ + +    WG+G  T   +   C+ +         N  ++V +EGIM   T 
Sbjct: 336 VGEVLQFYDNDRRFPAWGFGAKTPQGYISHCFNLNAT-----TNDCEVVGVEGIMSAYTS 390

Query: 456 ALCYATIVG 430
            L   T+ G
Sbjct: 391 TLYSVTLAG 399


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 651 VVAAQSFVGELLFFFCSGKIIKRWGYGTTLTFSL 550
           VV+  SF G + FF C+G IIK  G   T T  L
Sbjct: 448 VVSLASFNGFVRFFACTGLIIKWHGSKATRTVIL 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,922
Number of Sequences: 37544
Number of extensions: 345953
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)