Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f13
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    30   2.0  
Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 653 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 477
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 653 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYKRDGL 477
           ++  V+++L  N K+ C ++  QL       IVR+C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>Z75955-8|CAB00122.1|  410|Caenorhabditis elegans Hypothetical
           protein R07B7.13 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
 Frame = -1

Query: 722 SSLPITTVRXEKSKHLYEEKKSEVITNVVN-KLIRNNKMNCMEYAYQLWLQGSKDIVRDC 546
           SSLPI          + + K    ++ + N KLIRN +MN     Y     GS  +V   
Sbjct: 171 SSLPINYGDWRTLSEIIQMKPYLKVSKIPNLKLIRN-QMNAELAGYAH--NGSLAMVEYA 227

Query: 545 FPVEF-RLIFAENAIKL----MYKRDGLALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKF 381
             ++F   I  E AIKL    ++    L+ +  +    N   L F DG     PK +W  
Sbjct: 228 KMLDFFPKISKETAIKLVKHGLFMCGSLSFSRRSIQKYNSDILRFTDGSVAGKPKTNWNG 287

Query: 380 IALWENNKVYFKILNT 333
           + L ++ ++  K L++
Sbjct: 288 VML-DHRRIAQKTLHS 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,395
Number of Sequences: 27780
Number of extensions: 319622
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)