Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f12
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0169 - 1263679-1264349,1264437-1264641                           28   7.6  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    28   7.6  

>12_01_0169 - 1263679-1264349,1264437-1264641
          Length = 291

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 653 CSYAHAHECRAFPLALSLSIPPPQER*TFNSTLLEVALEVS 531
           C +  AH      LA  + +PPP    T N T  EVA  V+
Sbjct: 55  CLFPSAHRLLPDLLAAKMGLPPPPLISTLNGTAAEVARGVN 95


>04_04_1035 +
           30283456-30283536,30284823-30285359,30285508-30286512,
           30286718-30287042,30287563-30287818,30287901-30288117,
           30288743-30289095,30289330-30289833,30291267-30292467,
           30292614-30292970,30293258-30293495,30294083-30295125,
           30295234-30296649,30296731-30296855,30297036-30297314,
           30297352-30297382,30298957-30299022,30299447-30299689,
           30299848-30299898,30299980-30300071,30300182-30300249,
           30300515-30300600,30300720-30300824,30300994-30301127,
           30302403-30302436,30302620-30302892,30303019-30303288,
           30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 356 DVDVWTVQRALSGLVAAVR*KCYFHIKYSNIRMLFTS 246
           DV    +++ +  L+  +  KC+ H   SNI MLF S
Sbjct: 394 DVTATALKKCIMNLLIHLPRKCFSHDSISNISMLFDS 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,139
Number of Sequences: 37544
Number of extensions: 275072
Number of successful extensions: 618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)