Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f12
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    33   0.24 
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    29   2.2  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    29   2.2  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    29   2.2  
Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 295 NVIFTLNIQIYVCYLLHVIVNFYLFFSKFKYNKYPMEEM*T----VIRLLHCIYITFFRT 128
           N   T+N  IYV  +L+ + N   F S F     P   + T     I+  H + + FF T
Sbjct: 53  NSAHTMNHHIYVIIMLYFLFNTLFFLSDFLRFSLPATGILTSWSASIQPNHFLNLIFFFT 112

Query: 127 FPFCFCI 107
           F F +CI
Sbjct: 113 FYFNYCI 119


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 531 TSKMSVFKILLSSIIHIHVCQFIMFILC 448
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 227 TTVSGVFVLLFSATIILSLCGFIMFVCC 254


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 531 TSKMSVFKILLSSIIHIHVCQFIMFILC 448
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 233 TTVSGVFVLLFSATIILSLCGFIMFVCC 260


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 531 TSKMSVFKILLSSIIHIHVCQFIMFILC 448
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 233 TTVSGVFVLLFSATIILSLCGFIMFVCC 260


>Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical
           protein C31E10.6 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 398 TVASILIVDKTVCVDVDVWTVQRALSGLVAAVR*KCY---FHIKYSN 267
           T    L VD +V VD+  W +QR     +   R KC+   F++KY +
Sbjct: 120 TEQEFLNVDSSVLVDIITWVLQRISRQTMDMDRFKCFMACFNMKYED 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,549
Number of Sequences: 27780
Number of extensions: 288438
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)