Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f11
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0035 - 7592177-7592938 31 0.78
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533... 30 1.8
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 2.4
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 29 4.2
05_03_0033 - 7585267-7586028 28 5.5
11_02_0138 - 8708483-8709033,8709163-8709265,8709312-8709359,871... 28 7.3
03_06_0754 - 36025579-36027000 28 7.3
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 28 7.3
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 27 9.7
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 9.7
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461... 27 9.7
>05_03_0035 - 7592177-7592938
Length = 253
Score = 31.1 bits (67), Expect = 0.78
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = -3
Query: 599 EAEQQALPKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSS 420
+ E ++ PK + K+EP ++ +S S+ + + P+S P Y K P +
Sbjct: 126 QPEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEPKS--EPKYEPKSEP---T 180
Query: 419 SETQPGKKTITLRKTKNSSIESTMSLPNQKSLEK 318
+T+P ++ KT+ S P +KS K
Sbjct: 181 PQTEPRAESQPEPKTEPKSESKAEPKPERKSYSK 214
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 578 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP-VRSSSETQPG 402
PKD+ + E ++ + ++ + S+ + PES P S P +S +++P
Sbjct: 79 PKDEPKPEPEAMSASQPESKPATYSESKPESKAEPESKPEPKAESTPQPEAKSEPKSEPK 138
Query: 401 KKTITLRKTKNSSIESTMSLPNQKS 327
K+ + K+ S PN ++
Sbjct: 139 PKSEPYAEPKSEPKSEPQSEPNPET 163
>03_06_0531 +
34552206-34552598,34552665-34552735,34553363-34553369,
34553603-34553736,34553834-34554245,34554655-34554753,
34555059-34555283,34555652-34556029,34556412-34556555,
34556832-34556927,34557228-34557547,34557965-34558040
Length = 784
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 404 GKKTITLRKTKNSSIESTMSLPNQKSLEKKHGGL-RHQK 291
G KTI KTK + E +++L N + E HG + +HQ+
Sbjct: 377 GGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQR 415
>02_05_0484 - 29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = -3
Query: 515 SAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPN 336
+ IS++ D H ES + R K ++ PG+K LR+T ++ +T + N
Sbjct: 977 ATISEQDEDSEAHSESVSLGGQRRKRRQTAAAVTQAPGEKRYNLRRTTVAN-AATAAQTN 1035
Query: 335 QKSLEKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREA 213
+K KK G + +A ++ T + T + A + A
Sbjct: 1036 KKKAAKK-GSKQTVEATADDTEGTSKAEEPATGSKGASQSA 1075
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 502 KSQWTL--SFTQRARTILFTDRSSRRSGRRQKPNRARRRLL 386
+S+W + ++A IL R R RR++P R RRRLL
Sbjct: 5 ESRWVVVNEKEEKATKILSRARQIHRRCRRRRPRRRRRRLL 45
>05_03_0033 - 7585267-7586028
Length = 253
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -3
Query: 578 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP-VRSSSETQPG 402
PKD+ + E ++ + ++ + S+ + PES P S P +S +++P
Sbjct: 79 PKDEPKPEPEAMSASQPESKPATYSESKPESKAEPESKPEPKAESTPQPEAKSEPKSEPK 138
Query: 401 KKTITLRKTKNSSIESTMSLPNQKS 327
K+ + K+ S PN ++
Sbjct: 139 PKSELYAEPKSEPKSEPQSEPNPET 163
>11_02_0138 -
8708483-8709033,8709163-8709265,8709312-8709359,
8713887-8714359,8716353-8716508,8716572-8716617,
8716657-8716713
Length = 477
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 528 ADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQVVVRN 412
AD + Q + +G + SPR+ + + + A VVRN
Sbjct: 133 ADDFNKSQLEAAGEFLSPRDFDGHGTHVASTAAGSVVRN 171
>03_06_0754 - 36025579-36027000
Length = 473
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 548 PTTS--QRTLTRSSAISQKSVDVIVHPESSNNPL 453
PTT+ R+LT SSA+ SVDV V P S +
Sbjct: 250 PTTTPLHRSLTLSSAVHPSSVDVQVQPPVSRKSM 283
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 500 KSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLPNQKSLE 321
K D+I+H + + + VR+ +T P + LR+T S + + L Q L
Sbjct: 448 KHADLIIHKATQEHLISHVLPMLVRAYDDTDPRLQEEVLRRTVPLSRQLDVKLLKQSVLP 507
Query: 320 KKHG 309
+ HG
Sbjct: 508 RVHG 511
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 153 EEGADRENRPPVPMKYTLIQCFPQRLPVVRDGCLRGERDVRL 278
EEG D + P Y L QC P + V CL V+L
Sbjct: 202 EEGVDGDGDSGRPRMYALAQCTPDKAADVCRACLTTLTTVQL 243
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 470 SSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNSSIESTMSLP 339
SS++PL +AP SSSE K+ +L+++K S + + P
Sbjct: 265 SSSDPLCEGNIAPCSSSSEQ---KEDCSLKQSKTSILSCVFNSP 305
>01_06_0850 +
32444475-32444722,32445159-32445312,32445763-32446160,
32446476-32446571,32446650-32446722,32446854-32447136,
32447225-32447556,32447642-32447912,32448502-32448783,
32449106-32449518
Length = 849
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 517 DRVSVLCDVVGSAFWIMSSLGNACCSASI 603
D S LC + GSA +M+ GN+C S+++
Sbjct: 716 DFFSFLCGINGSAPVVMNYTGNSCSSSAM 744
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,722
Number of Sequences: 37544
Number of extensions: 285710
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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