Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f11
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 35 0.057
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 31 0.70
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 31 0.70
U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81076-8|CAB03056.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 29 3.7
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 4.9
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 4.9
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 28 6.5
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 28 6.5
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 28 6.5
Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical pr... 27 8.6
Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein pro... 27 8.6
CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical ... 27 8.6
AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival moto... 27 8.6
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 27 8.6
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 34.7 bits (76), Expect = 0.057
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = -3
Query: 560 QKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLR 381
+KAE ++S + + SS+ S S D H + + SSS + + +
Sbjct: 247 KKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVKHHKKAASSSSSSSSSSSSSSS 306
Query: 380 KTKNSSIESTMSLPNQKSLEKK-HGGLRHQKAVGAQSDITLTTQTS 246
+ +SS ES +K KK HG H+KA + S + ++ +S
Sbjct: 307 SSSSSSSESEDEKKKKKVHHKKSHGKKHHKKAASSSSSSSSSSSSS 352
Score = 32.3 bits (70), Expect = 0.30
Identities = 33/155 (21%), Positives = 63/155 (40%)
Frame = -3
Query: 545 TTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTKNS 366
++S + + SS+ S +S D H + + SSS + + + + +S
Sbjct: 119 SSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSS 178
Query: 365 SIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREALYQGIFHRH 186
S ES + K KKH H+KA + S + ++ +S + + + + H H
Sbjct: 179 SSESEDEKHHHKKHAKKHLKKHHKKAESSSSS-SSSSSSSSSSSSSSSSSSESEDEKHHH 237
Query: 185 RRTIFAVGSFLRMLRSKTSNYDSIRSDSDEI*HQD 81
++ AV + S +S+ S S S +D
Sbjct: 238 KK--HAVKKHHKKAESSSSSSSSSSSSSSSSSSED 270
Score = 27.5 bits (58), Expect = 8.6
Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 1/151 (0%)
Frame = -3
Query: 545 TTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRS-KLAPVRSSSETQPGKKTITLRKTKN 369
++S + + SS+ S+ + H + + L + K A SSS + + + + +
Sbjct: 167 SSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSS 226
Query: 368 SSIESTMSLPNQKSLEKKHGGLRHQKAVGAQSDITLTTQTSITDDRKALREALYQGIFHR 189
SS ++K KKH + + S + ++ +S D++ ++ +
Sbjct: 227 SSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAKKHVKH 286
Query: 188 HRRTIFAVGSFLRMLRSKTSNYDSIRSDSDE 96
H++ + S S +S+ S S+S++
Sbjct: 287 HKKAASSSSSSSSSSSSSSSSSSSSSSESED 317
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = -3
Query: 578 PKDDMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGK 399
P+ + EP T ++S+A+ Q++ D V P + +PL P S E +P
Sbjct: 594 PEPEPKSTPEPVTDGPNESQSTALPQQTTDAPVDPVTEASPLNPQPPPPPSPSPEPEPEP 653
Query: 398 KTITLRKTKNSSIE 357
K + KN +++
Sbjct: 654 KP-PVTPPKNETVD 666
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -3
Query: 551 EPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTK 372
EP +S + +++ I+ P SSN P+ + ++S P T ++ T
Sbjct: 800 EPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTT 859
Query: 371 NSSIESTMSLPNQKS 327
++ E+T + P S
Sbjct: 860 TTAPETTSTEPPSSS 874
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = -3
Query: 551 EPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTK 372
EP +S T +++ + P SSN P+ + ++S P T ++ T
Sbjct: 662 EPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTT 721
Query: 371 NSSIESTMSLPNQKS 327
++ E+T + P S
Sbjct: 722 TTAPETTSTEPPSSS 736
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/75 (22%), Positives = 32/75 (42%)
Frame = -3
Query: 551 EPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAPVRSSSETQPGKKTITLRKTK 372
EP +S T +++ + P SSN P+ + ++S P T ++ T
Sbjct: 754 EPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTT 813
Query: 371 NSSIESTMSLPNQKS 327
++ E+T + P S
Sbjct: 814 ITAPETTSTEPPSSS 828
>U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical
protein F46H5.7b protein.
Length = 575
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = -2
Query: 555 GGADNVTKNADSIERHQPKVSGRYRSPR--ELEQSSLQIEARAGQVVVRNPTGQEDDYFE 382
G A+N + A++ E+ Q + + Y + R +LEQ + ++ Q+ R T + +
Sbjct: 309 GLANNSIRQAEA-EKQQLQEANWYANERVGKLEQENGYLKGITEQLKARADTSHAEKMLK 367
Query: 381 ENKKFVNRINDEPSKPE 331
+++K V IN+E SK E
Sbjct: 368 DSEKRVWEINEEKSKLE 384
>U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical
protein F46H5.7a protein.
Length = 572
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = -2
Query: 555 GGADNVTKNADSIERHQPKVSGRYRSPR--ELEQSSLQIEARAGQVVVRNPTGQEDDYFE 382
G A+N + A++ E+ Q + + Y + R +LEQ + ++ Q+ R T + +
Sbjct: 309 GLANNSIRQAEA-EKQQLQEANWYANERVGKLEQENGYLKGITEQLKARADTSHAEKMLK 367
Query: 381 ENKKFVNRINDEPSKPE 331
+++K V IN+E SK E
Sbjct: 368 DSEKRVWEINEEKSKLE 384
>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
protein C34F6.9 protein.
Length = 1181
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 618 KQNDRNRS*TAGVAQGRHDPEGGADNVTKNADSIERHQPKVSGRYRSPRELEQSSL 451
K DR S GV PE A N T N I + +PK S + +S E E S+
Sbjct: 621 KSQDRKES--EGVQLNSPLPENHAVNQTVNQSMIRKGRPKRSTKTKSGSETENESM 674
>Z81076-8|CAB03056.1| 385|Caenorhabditis elegans Hypothetical
protein F35C5.7 protein.
Length = 385
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/68 (25%), Positives = 26/68 (38%)
Frame = -2
Query: 552 GADNVTKNADSIERHQPKVSGRYRSPRELEQSSLQIEARAGQVVVRNPTGQEDDYFEENK 373
G V N + P++ Y PR S L + A V N DD ++
Sbjct: 48 GITEVAANIATTFASGPRIGTDYSDPRSTRLSILTYNSEATVVADLNQFQSADDVYQTLF 107
Query: 372 KFVNRIND 349
F+N ++D
Sbjct: 108 SFLNEVSD 115
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 486 YRSPRELEQSSLQIEARAGQV---VVRNPTGQEDDYFEENKK 370
YR P+E+EQ L E R +V V+ P + DY E KK
Sbjct: 350 YRDPKEVEQEML--EKRLAEVKLDYVKEPKWVDTDYVENKKK 389
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 602 IEAEQQALPKDDMI---QKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP 432
I A P+D + Q EPTTSQ+ + R++ S+ + E P+ +K AP
Sbjct: 612 IAATSSTEPEDKVTSSEQTPEPTTSQKFIARNTR-SKTKESAVQKVEKPATPV--AKPAP 668
Query: 431 VRSSSETQPGKKTI 390
V E +P K +
Sbjct: 669 VEKEPEERPLKSML 682
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 602 IEAEQQALPKDDMI---QKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSKLAP 432
I A P+D + Q EPTTSQ+ + R++ S+ + E P+ +K AP
Sbjct: 612 IAATSSTEPEDKVTSSEQTPEPTTSQKFIARNTR-SKTKESAVQKVEKPATPV--AKPAP 668
Query: 431 VRSSSETQPGKKTI 390
V E +P K +
Sbjct: 669 VEKEPEERPLKSML 682
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -2
Query: 609 DRNRS*TAGVAQGRHDPEGGADNVTKN-ADSIERHQPKVSGRYRSPRELEQSSLQIEARA 433
D S GVA G H E DN T N +D+IE VS R + + L+ ++
Sbjct: 473 DETDSGCEGVASGDHPQEFLEDNATINSSDAIEEKPKPVSERMVTINGDDLQLLKAQSYV 532
Query: 432 GQVVVRNPTGQEDDYFEENKKFVNRINDEPSKP 334
+ + + ++ + RI E S P
Sbjct: 533 FSKIAETSSSLPSSGMDGDRSHMLRIRTEVSVP 565
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -2
Query: 609 DRNRS*TAGVAQGRHDPEGGADNVTKN-ADSIERHQPKVSGRYRSPRELEQSSLQIEARA 433
D S GVA G H E DN T N +D+IE VS R + + L+ ++
Sbjct: 597 DETDSGCEGVASGDHPQEFLEDNATINSSDAIEEKPKPVSERMVTINGDDLQLLKAQSYV 656
Query: 432 GQVVVRNPTGQEDDYFEENKKFVNRINDEPSKP 334
+ + + ++ + RI E S P
Sbjct: 657 FSKIAETSSSLPSSGMDGDRSHMLRIRTEVSVP 689
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 386 LRKTKNSSIESTMSLPNQKSLEKKHG-----GLRHQKAVGAQSDITLTTQTSITDDRKAL 222
LR+TK +S+ LPN+K LE+ + ++ +S++ T T I+ + K +
Sbjct: 213 LRRTKKKKKKSSKKLPNRKDLEESEDIESSTHYIYPESRNLKSNLQKLT-TDISTEEKQI 271
Query: 221 REALYQG 201
RE L G
Sbjct: 272 RERLKLG 278
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = -2
Query: 630 IIEHKQNDRNRS*TAGVAQGRHDPEGGADNVTKNADSIERHQPKVSGR-YRSPRELEQSS 454
I EH++N GRH G + ++DS + + K + R ++ E+
Sbjct: 76 IQEHRENRGRHGHHGRHGMGRHGGHGRRNKSGSDSDSSDSSEDKKKRKQMRDKKKQEEED 135
Query: 453 LQIEARAGQVVVRNPTGQEDDYFEE--NKKFVNRINDEPSKPE 331
+ E ++ +EDD EE +KK + ND+ + +
Sbjct: 136 KKKEEEEKDKKKKDKKKEEDDEEEEQKDKKKKDEKNDDDDEED 178
>Z81048-7|CAC42273.1| 207|Caenorhabditis elegans Hypothetical
protein C41G7.1b protein.
Length = 207
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 431 VRSSSETQPGKKTITLRKTKNSSIESTMSLPN 336
V++ ++ Q KKT T+ +S+ +ST S PN
Sbjct: 120 VKAENDLQKTKKTSTVNSVAHSNSKSTSSAPN 151
>Z81048-6|CAB02838.1| 197|Caenorhabditis elegans Hypothetical
protein C41G7.1a protein.
Length = 197
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 431 VRSSSETQPGKKTITLRKTKNSSIESTMSLPN 336
V++ ++ Q KKT T+ +S+ +ST S PN
Sbjct: 110 VKAENDLQKTKKTSTVNSVAHSNSKSTSSAPN 141
>Y17255-1|CAB41945.1| 197|Caenorhabditis elegans SMN protein
protein.
Length = 197
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 431 VRSSSETQPGKKTITLRKTKNSSIESTMSLPN 336
V++ ++ Q KKT T+ +S+ +ST S PN
Sbjct: 110 VKAENDLQKTKKTSTVNSVAHSNSKSTSSAPN 141
>CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical
protein T06A10.4 protein.
Length = 247
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 465 EQSSLQIEARAG-QVVVRNPTGQEDDYFEENKKFVNRINDEPSKPE 331
E S +IE +G +V++++ G+ + EE +KF+ +N P PE
Sbjct: 81 EYSDQKIEIASGLKVLLKDVYGK---FMEEEQKFIENLNKIPKAPE 123
>AF156887-1|AAF00192.1| 207|Caenorhabditis elegans survival motor
neuron protein protein.
Length = 207
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 431 VRSSSETQPGKKTITLRKTKNSSIESTMSLPN 336
V++ ++ Q KKT T+ +S+ +ST S PN
Sbjct: 120 VKAENDLQKTKKTSTVNSVAHSNSKSTSSAPN 151
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -3
Query: 569 DMIQKAEPTTSQRTLTRSSAISQKSVDVIVHPESSNNPLYRSK 441
DMI K T QR I+QKS+ I P SNN Y K
Sbjct: 550 DMINKTTYTAQQRGKLLQHIIAQKSLSGI-EPPVSNNDDYMKK 591
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,655
Number of Sequences: 27780
Number of extensions: 246194
Number of successful extensions: 919
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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