Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f11
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.47 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 236 DRKALREALYQGIFHRHRRTIFAVGSFLRMLRSKTSNYDSIRSDSDEI*H 87
           D  AL E +Y G  + H+R++ +      +LR       + ++D DE+ H
Sbjct: 80  DLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSH 129


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 545 SAPPSGSCRPWATPAVQLL--LRSFCLCSI 628
           SAP   SC P A  A  LL   RS   CS+
Sbjct: 149 SAPTGSSCGPGAAAAAALLSKRRSVSECSL 178


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 380 KTKNSSIESTMSLPNQKSLEKKHGGLRHQKA 288
           ++ N +I+S    PN  S + +     HQ+A
Sbjct: 92  ESDNENIKSQKEFPNSSSSDDERPNSIHQRA 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,483
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)