Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f10
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    30   1.6  
09_04_0222 + 15825878-15826451,15826542-15827017                       29   4.8  
08_02_1161 + 24805777-24806356,24806447-24806922                       29   4.8  
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953...    29   4.8  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    28   8.3  
01_01_0688 - 5267781-5267814,5269851-5270153,5270605-5270870,527...    28   8.3  

>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 506 KQILIYYNQYAQHTGFYLLPDFLQTKSKYICTFRGF 613
           K+   +YN YA+  GF++    L T SK I T R F
Sbjct: 112 KEAYDFYNAYAEMVGFFVRRSTLWTTSKNIITRRTF 147


>09_04_0222 + 15825878-15826451,15826542-15827017
          Length = 349

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 392 LHIFYANVIDFLLKLIYKTRKILYKKQQQVLFRLKMI*KQILIYYNQYAQHTG 550
           +H    NVI+    L+    +ILYK     +++ KMI +  ++ +N   +H G
Sbjct: 237 VHSSIRNVIERSFGLLKMKWQILYKMPCYPMYKQKMIVEAAMVLHNYIREHGG 289


>08_02_1161 + 24805777-24806356,24806447-24806922
          Length = 351

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 392 LHIFYANVIDFLLKLIYKTRKILYKKQQQVLFRLKMI*KQILIYYNQYAQHTG 550
           +H    NVI+    L+    +ILYK     +++ KMI +  ++ +N   +H G
Sbjct: 239 VHSSIRNVIERSFGLLKMKWQILYKMPCYPMYKQKMIVEAAMVLHNYIREHGG 291


>03_02_0569 -
           9528027-9529256,9530019-9530260,9530374-9531161,
           9531613-9531953,9532090-9532310,9532392-9532702,
           9532779-9533038,9533691-9533891,9533992-9534167,
           9534242-9534296,9535739-9536146
          Length = 1410

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 674 NGXVTQLQFIT*VPVMSEIIEILGTYIYI*ILFVGNLVVNRIQC 543
           NG +        + + S I E +G YI+    FVG LVV  I C
Sbjct: 192 NGDIVSQVLSDVLLIQSAISEKVGNYIHNMATFVGGLVVGLINC 235


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 255  DLYKNIFKVLDLHDKAILTMPTLKCNLSWIV 163
            +L K +F+   +  K  +  PT  C++SW V
Sbjct: 956  ELQKRLFEQASISHKICMRTPTFHCDVSWTV 986


>01_01_0688 -
           5267781-5267814,5269851-5270153,5270605-5270870,
           5273319-5273785,5273877-5274501
          Length = 564

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 506 KQILIYYNQYAQ----HTGFYLLPDFLQTKSKY 592
           KQ L YY   A+    H G  L P F+Q KSKY
Sbjct: 508 KQYLPYYGSQAEWQKRHFGANLWPRFVQRKSKY 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,229
Number of Sequences: 37544
Number of extensions: 290239
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)