Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f08
         (725 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domai...    96   1e-19
BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type...    96   1e-19
AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type ...    96   1e-19
AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized hematop...    96   1e-19
BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein pr...    94   4e-19
BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domai...    94   4e-19
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr...    31   4.2  

>BC059168-1|AAH59168.1|  108|Homo sapiens CDGSH iron sulfur domain 1
           protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC008474-1|AAH08474.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC007043-1|AAH07043.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BC005962-1|AAH05962.1|  108|Homo sapiens zinc finger, CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>AY960578-1|AAY32336.1|  108|Homo sapiens zinc finger CDGSH-type
           domain 1 protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>AF220049-1|AAF67642.1|  108|Homo sapiens uncharacterized
           hematopoietic stem/progenitor cells protein MDS029
           protein.
          Length = 108

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 39/95 (41%), Positives = 57/95 (60%)
 Frame = -3

Query: 681 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 502
           +W+A +        I Y +Y+            IN  I+KD  K+V   D+ED+ +KA  
Sbjct: 12  EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71

Query: 501 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           CRCWRSK +P+CDG+H  HN+ETGDN GP++++ K
Sbjct: 72  CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106


>BX537971-1|CAD97935.1|  150|Homo sapiens hypothetical protein
           protein.
          Length = 150

 Score = 94.3 bits (224), Expect = 4e-19
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
 Frame = -3

Query: 705 GWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGSGQINPCIRKDINKVVDFIDI 529
           G+ RL V +WL L+P   V+  + Y + +  + K ++     IN  I+K+  KVV+ I+I
Sbjct: 44  GFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKDSLINLKIQKENPKVVNEINI 103

Query: 528 EDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           ED+   KA+ CRCWRSK +P CDGSH  HN+ TGDN GP++++ K
Sbjct: 104 EDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 148


>BC032300-1|AAH32300.1|  135|Homo sapiens CDGSH iron sulfur domain 2
           protein.
          Length = 135

 Score = 94.3 bits (224), Expect = 4e-19
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
 Frame = -3

Query: 705 GWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGSGQINPCIRKDINKVVDFIDI 529
           G+ RL V +WL L+P   V+  + Y + +  + K ++     IN  I+K+  KVV+ I+I
Sbjct: 29  GFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKDSLINLKIQKENPKVVNEINI 88

Query: 528 EDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 397
           ED+   KA+ CRCWRSK +P CDGSH  HN+ TGDN GP++++ K
Sbjct: 89  EDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 133


>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
            2 protein.
          Length = 1722

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 576  PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 460
            PC  K +  V    +I++I+ K+ LC C+  K +W  CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,743,802
Number of Sequences: 237096
Number of extensions: 1922112
Number of successful extensions: 3398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)