Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f08
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p pro...   149   3e-36
AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p pro...   149   3e-36
AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA...   149   3e-36
X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM pro...    33   0.52 
BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p pro...    33   0.52 
AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM p...    33   0.52 
AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,...    33   0.52 
AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,...    33   0.52 
AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein...    31   1.2  
AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA...    31   1.2  
BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p pro...    30   3.7  
AE014134-3384|AAN11115.1|  381|Drosophila melanogaster CG31622-P...    30   3.7  
AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p pro...    29   4.9  
AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA ...    29   4.9  
BT001712-1|AAN71467.1|  151|Drosophila melanogaster RE67710p pro...    29   8.5  
AE014297-766|AAN13389.1|  141|Drosophila melanogaster CG31460-PA...    29   8.5  

>AY095084-1|AAM11412.1|  133|Drosophila melanogaster RE49709p
           protein.
          Length = 133

 Score =  149 bits (362), Expect = 3e-36
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
 Frame = -3

Query: 705 GWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SGQINPCIRKDINKVVD 541
           GWF+L  KDWLALIPPTVVV G+ Y +Y     A  A      SG+ N  IRK+  KVVD
Sbjct: 27  GWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSGRCNNHIRKNEPKVVD 86

Query: 540 FIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVR 403
            ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V++
Sbjct: 87  MIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132


>AY071722-1|AAL49344.1|  133|Drosophila melanogaster RH38554p
           protein.
          Length = 133

 Score =  149 bits (362), Expect = 3e-36
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
 Frame = -3

Query: 705 GWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SGQINPCIRKDINKVVD 541
           GWF+L  KDWLALIPPTVVV G+ Y +Y     A  A      SG+ N  IRK+  KVVD
Sbjct: 27  GWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSGRCNNHIRKNEPKVVD 86

Query: 540 FIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVR 403
            ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V++
Sbjct: 87  MIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132


>AE014297-4356|AAF56878.1|  133|Drosophila melanogaster CG1458-PA
           protein.
          Length = 133

 Score =  149 bits (362), Expect = 3e-36
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 5/106 (4%)
 Frame = -3

Query: 705 GWFRLGVKDWLALIPPTVVVGGISYYSYQTIKKAREAG-----SGQINPCIRKDINKVVD 541
           GWF+L  KDWLALIPPTVVV G+ Y +Y     A  A      SG+ N  IRK+  KVVD
Sbjct: 27  GWFKLSFKDWLALIPPTVVVAGLGYTAYLAYCPAARASCAAKNSGRCNNHIRKNEPKVVD 86

Query: 540 FIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVR 403
            ID+EDI EKA+ CRCW++KNWPYCDGSHG HNK+TGDN GP+V++
Sbjct: 87  MIDVEDIAEKAAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIK 132


>X91245-1|CAA62627.1|  495|Drosophila melanogaster muscle LIM
           protein protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 645 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 466
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 465 DGSHG 451
            G HG
Sbjct: 280 -GPHG 283


>BT003202-1|AAO24957.1|  495|Drosophila melanogaster RE40142p
           protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 645 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 466
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 465 DGSHG 451
            G HG
Sbjct: 280 -GPHG 283


>AF090832-1|AAC61591.1|  495|Drosophila melanogaster muscle LIM
           protein at 84B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 645 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 466
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 465 DGSHG 451
            G HG
Sbjct: 280 -GPHG 283


>AE014297-561|AAF54064.1|  495|Drosophila melanogaster CG1019-PB,
           isoform B protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 645 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 466
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 465 DGSHG 451
            G HG
Sbjct: 280 -GPHG 283


>AE014297-560|AAF54063.1|  495|Drosophila melanogaster CG1019-PA,
           isoform A protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -3

Query: 645 GGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYC 466
           GG+ Y + Q + K RE      N C  KD +K +D I+  D  ++   CR    K W   
Sbjct: 226 GGVVYAAEQKLSKGREWHKKCFN-C--KDCHKTLDSINASDGPDRDVYCRTCYGKKW--- 279

Query: 465 DGSHG 451
            G HG
Sbjct: 280 -GPHG 283


>AJ556820-1|CAD89219.3| 1641|Drosophila melanogaster Tho2 protein
           protein.
          Length = 1641

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 499 AKGCLLSYILNVNKVY-NFINVLPDTRVYLTTASFSGFFYCLVRVVRYT 642
           A G L  YIL   ++Y N I  + D   YLT  SF    YC++  +  T
Sbjct: 636 APGLLFDYILLQIQIYDNLIGPVCDLLKYLTALSFDCLGYCIIESLTLT 684


>AE014134-342|AAF51302.2| 1641|Drosophila melanogaster CG31671-PA
           protein.
          Length = 1641

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 499 AKGCLLSYILNVNKVY-NFINVLPDTRVYLTTASFSGFFYCLVRVVRYT 642
           A G L  YIL   ++Y N I  + D   YLT  SF    YC++  +  T
Sbjct: 636 APGLLFDYILLQIQIYDNLIGPVCDLLKYLTALSFDCLGYCIIESLTLT 684


>BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p
           protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 336 FYIIFSKTTLAIYFFVFSWLVCV*QRLGRCCRQ 434
           F+I F+   + +  F+ +W+ C+   LG+CC++
Sbjct: 28  FFICFAAVIVGVSVFLGTWIFCI---LGKCCQR 57


>AE014134-3384|AAN11115.1|  381|Drosophila melanogaster CG31622-PC,
           isoform C protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +1

Query: 502 KGCLLSYILNVNKVYNFINVLPDTRVYLTTASFSGFFYCLVRVVRYTANYN 654
           K C+  ++ + ++++  I  L     YL T+   G ++C+V +VR   ++N
Sbjct: 146 KTCIFEWLTDASRLF-VITSLGFPLRYLVTSFTMGTYFCMVHIVRLVLDWN 195


>AY128477-1|AAM75070.1|  939|Drosophila melanogaster RE39339p
           protein.
          Length = 939

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 640 YILLLLPDNKKSQRSWQWSNKPLYQEG 560
           Y+ LLL D+      W W  +P+Y++G
Sbjct: 802 YVQLLLNDHDHEVDMWCWGGEPIYRDG 828


>AE014298-628|AAF45943.3|  939|Drosophila melanogaster CG3626-PA
           protein.
          Length = 939

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 640 YILLLLPDNKKSQRSWQWSNKPLYQEG 560
           Y+ LLL D+      W W  +P+Y++G
Sbjct: 802 YVQLLLNDHDHEVDMWCWGGEPIYRDG 828


>BT001712-1|AAN71467.1|  151|Drosophila melanogaster RE67710p
           protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 322 LFYLRLSISNHGLL-RKCLKRNALYNIISVLFISYKTTRFYIV 197
           +F L L+++  GL+ R C   + L++++ + F++  +T++Y V
Sbjct: 91  IFCLSLTVAAAGLVHRVCATTSVLFSLVGLYFLNRISTKYYSV 133


>AE014297-766|AAN13389.1|  141|Drosophila melanogaster CG31460-PA
           protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 322 LFYLRLSISNHGLL-RKCLKRNALYNIISVLFISYKTTRFYIV 197
           +F L L+++  GL+ R C   + L++++ + F++  +T++Y V
Sbjct: 81  IFCLSLTVAAAGLVHRVCATTSVLFSLVGLYFLNRISTKYYSV 123


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,290,118
Number of Sequences: 53049
Number of extensions: 566043
Number of successful extensions: 1450
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)