Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f07
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    30   0.20 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   1.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   2.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   2.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   5.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.7  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   7.7  

>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 149 RRLSESGEYTVAVEQVYPWWEGLAAYERMARGSARGKLILDFK 21
           R+  ++GEY +A    +PWW    A ++      R +L  +F+
Sbjct: 58  RKSYKNGEYVLAKMSSFPWWPARVASQKSIPTEVRERLKRNFR 100


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 123 HGGCGAGVPLVGRVGGIRAHGP-GLGSRETDL 31
           HGGCGA  P + R  G+R  G    G  E+DL
Sbjct: 172 HGGCGAAQPTI-RKDGLRLWGSWKRGKDESDL 202


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 50  PSPGPCARMPPTLPTKGTPAPQPP 121
           P+P P   +PP  P  G P P PP
Sbjct: 744 PAPAPIP-VPPPAPIMGGPPPPPP 766


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 77  PPTLPTKGTPAPQPPCT 127
           PP +PTK TP+ +P  T
Sbjct: 234 PPRIPTKATPSAEPSMT 250


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 17  VP*SLRSVSREPSPGPCARMPPTLPTKGTPAPQPP 121
           +P +      +P P P    PPTLP + T   Q P
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP 257


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 35   SVSREPSPGPCARMPPT-LPTKGTPAPQPP 121
            SV+  P P P + +PP   P  G P   PP
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 35   SVSREPSPGPCARMPPT-LPTKGTPAPQP 118
            SV+  P P P   +PP   P+   P P+P
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 309  QTPSVRVPEERAAEGDVTGEAPATRTRLP 395
            + P+V VP   A    VT + P   +RLP
Sbjct: 1034 EPPTVSVPSPSALSPSVTPQLPPVSSRLP 1062


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 53  SPGPCARMPPTLPTKGTPAPQ-PPCTLHFQTN 145
           S G   R+P + PT   PA Q PPC   +  N
Sbjct: 401 SHGIHQRIPASTPTNTNPADQNPPCNTIYVGN 432


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 131 GEYTVAVEQVYPWWEGLAAYERMARGSARGKLILDF 24
           G+YT AV  V+P  E +A    +     RGK+  DF
Sbjct: 238 GDYTTAVTLVFPKTESIA---MLCTSMDRGKMSDDF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,094
Number of Sequences: 5004
Number of extensions: 24773
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)