Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f07
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical ... 42 2e-04
U61949-6|AAB03154.1| 166|Caenorhabditis elegans Hypothetical pr... 34 0.059
AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical ... 30 0.73
U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 29 1.3
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 2.2
Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical p... 28 2.9
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 28 2.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 2.9
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 28 2.9
Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical ... 28 3.9
AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical... 28 3.9
AC024746-10|AAF60400.2| 483|Caenorhabditis elegans Hypothetical... 28 3.9
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 27 5.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 6.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 6.8
U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical p... 27 6.8
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 27 6.8
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 27 6.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 6.8
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 27 9.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 9.0
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical... 27 9.0
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 27 9.0
>AF067618-4|AAY44003.1| 381|Caenorhabditis elegans Hypothetical
protein F56H1.6 protein.
Length = 381
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = -1
Query: 191 WAYFMPNADDIEMLRRLSESGEYTVAVEQVYPWWEGLAAYERMARGSARGKLILDF 24
+A+F P++D + L R +E G+ VEQV + E AYE++++ + RGK ++ +
Sbjct: 325 YAFFRPSSDLMSQLSRFAEDGKIVPVVEQVMGFEELEKAYEKVSQLNGRGKTVIKY 380
>U61949-6|AAB03154.1| 166|Caenorhabditis elegans Hypothetical
protein F49E8.6 protein.
Length = 166
Score = 33.9 bits (74), Expect = 0.059
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 50 PSPGPCARMPPTLPTKGTPAPQPP 121
P PGP + PPTLPT P PP
Sbjct: 129 PPPGPSSSAPPTLPTSSGNLPPPP 152
>AF101312-1|AAC69221.3| 813|Caenorhabditis elegans Hypothetical
protein F56E10.2 protein.
Length = 813
Score = 30.3 bits (65), Expect = 0.73
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +2
Query: 26 SLRSVSREPSPGPCARMPPTLPTKGTPAPQPP 121
SL S S SP PP LP PAP PP
Sbjct: 303 SLASTSASSSPSDPCPSPPLLPPVCPPAPPPP 334
>U41993-4|AAA83446.4| 574|Caenorhabditis elegans Hypothetical
protein F44A2.3 protein.
Length = 574
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 46 RAEPRAMRSYAANPSHQGYTCSTATVYSPLSDKRLSISI 162
R A++++A++ + G+T STA+++SPL +S+
Sbjct: 509 RTTKSALQNFASSATANGFTLSTASMHSPLRLSHPEVSL 547
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = +2
Query: 17 VP*SLRSVSREPS---PGPCAR-MPPTLPTKG--TPAPQPPCTLHFQTNA*AFR 160
VP S + R PS P P R M TLP TP P PP T F T +FR
Sbjct: 168 VPPSKERIKRIPSYLKPTPAPRSMSATLPRARLKTPPPPPPVTNQFDTLPVSFR 221
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 50 PSPGPCARMPPTLPTKGTPAPQPP 121
P P P A +PP LP P P PP
Sbjct: 483 PPPSPPA-LPPALPNPNEPPPPPP 505
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 154 CLGVCLKVESTRWLWSRCTLGGKGWRH 74
C+G+ + ++W +RCT G K +H
Sbjct: 337 CVGLTAEPTDSKWFCTRCTKGNKSKKH 363
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +3
Query: 276 ELAGGGREPQGQTPSVRVPEERAAEGDVTGEAPAT 380
E AGGG EP G P A EG GEAP T
Sbjct: 411 EGAGGGAEPAGAAPEAAA---AAPEGAGGGEAPPT 442
>Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical
protein Y48E1B.16 protein.
Length = 347
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 53 SPGPCARMP-PTLPTKGTPAPQPP 121
+PGP A P PT P G PAP+ P
Sbjct: 99 APGPRAPAPAPTRPQYGVPAPRAP 122
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 279 LAGGGREPQGQTPSVRVPEERAAEGDVTGEAPATRTR 389
LA GG P +TP+ + P R + V AP T TR
Sbjct: 44 LAAGGATPAPKTPAPKTP-SRTTKSTVDTPAPKTPTR 79
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 20 P*SLRSVSREPSPGPCARMPPTLPTKGTPAPQPPCT 127
P R+ P P P R+P T P + P +PP T
Sbjct: 128 PRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMT 163
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 44 REPSPGPCARMPPTLPTKGTPAPQPPC 124
R PSP R PP+ P + P QP C
Sbjct: 38 RPPSPSRPQRPPPSRPQRPPPPRQPRC 64
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 178 CPTLTISKCLGVCLKVESTRWLWSRCT-LGGKGW 80
CP T++ G CL + +W+ +CT + K W
Sbjct: 242 CPICTLASKNGTCLCTKCQKWVHLKCTGIRSKQW 275
>Z68105-5|CAA92123.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 285 GGGREPQGQTPSVRVPEERAAEGDVTGEAPATRTRLPXPQTRAXXD 422
GG E + TP+V+ P+E A A + +L P ++ D
Sbjct: 439 GGDVESKPATPAVQTPDESRATSTARSRESARKEKLATPDSKNAAD 484
>AL009066-1|CAA15625.2| 729|Caenorhabditis elegans Hypothetical
protein F13E6.2 protein.
Length = 729
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 285 GGGREPQGQTPSVRVPEERAAEGDVTGEAPATRTRLPXPQTRAXXD 422
GG E + TP+V+ P+E A A + +L P ++ D
Sbjct: 439 GGDVESKPATPAVQTPDESRATSTARSRESARKEKLATPDSKNAAD 484
>AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical
protein Y51H7C.13 protein.
Length = 344
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +2
Query: 11 AVVP*SLRSVSR----EPSPGPCARMPPTLPTKGTPAPQPPCTLHFQTN 145
AVVP ++ S + P PC +PPT T T +PPC TN
Sbjct: 113 AVVPPAVSGTSPPAPVDQKPPPC--IPPTTTTTTTTTTRPPCPYPPATN 159
>AC024746-10|AAF60400.2| 483|Caenorhabditis elegans Hypothetical
protein Y110A2AL.2 protein.
Length = 483
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 202 RTCAGPTSCPTLTISKCLGVCLKVESTRWLWSRCTLGGKGWRHTSAWPGARLA 44
+TC GPT+ PT+ +C + VE R R + G T G A
Sbjct: 233 QTCRGPTTAPTM--GRCWSDDVMVEGNRCCAKRDVIDGSSSNRTQTCRGPTTA 283
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 62 PCARMPPTLPTKGTPAPQPP 121
P + +PP P PAPQPP
Sbjct: 821 PLSTLPPPPPPNPPPAPQPP 840
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +2
Query: 50 PSPGPCARMPPTLPT---KGTPAPQPP 121
P PG C PP P KG P P PP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +2
Query: 50 PSPGPCARMPPTLPT---KGTPAPQPP 121
P PG C PP P KG P P PP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>U27312-10|AAA68253.1| 231|Caenorhabditis elegans Hypothetical
protein F26A1.12 protein.
Length = 231
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 44 REPSPGPCARMPPTLPTKGTPAPQPP 121
R P P R PP P TPAP P
Sbjct: 49 RPPRPNRPPRPPPATPPPTTPAPSCP 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 4 TGGGGALKSKISFPRAEPRAMRSYAANPS 90
+GGGG +S+ PRAE RA Y+ S
Sbjct: 204 SGGGGRDRSRSRSPRAERRASPKYSPRRS 232
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 4 TGGGGALKSKISFPRAEPRAMRSYAANPS 90
+GGGG +S+ PRAE RA Y+ S
Sbjct: 204 SGGGGRDRSRSRSPRAERRASPKYSPRRS 232
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = +2
Query: 50 PSPGPCARMPPTLPT---KGTPAPQPP 121
P PG C PP P KG P P PP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPPP 372
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 50 PSPGPCARMPPTLPTKGTPAPQPPCT 127
PSP P R+P P P P P T
Sbjct: 488 PSPQPVYRLPSPKPVTPEPLPSPTIT 513
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +2
Query: 35 SVSREPSPGPCARMPPTLPTKG--TPAPQPP 121
S SR SP P PP P TP P PP
Sbjct: 1329 STSRSSSPSPPPPPPPPPPPSDDLTPVPPPP 1359
>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
protein Y48G8AL.1 protein.
Length = 1019
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -1
Query: 179 MPN-ADDIEMLRRLSESGEYT 120
+PN ADD+E+LRRL S E+T
Sbjct: 993 LPNIADDVELLRRLRISIEHT 1013
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 10 GGGALKSKISFPRAEPRAMRSYAANPSHQGYTCSTATVYSPL 135
GGGA K P E + + A +PSH GY + Y P+
Sbjct: 91 GGGAGKEDYGAPATE-QPYNAPAPSPSHGGYDQPSNNGYGPV 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,807,764
Number of Sequences: 27780
Number of extensions: 163839
Number of successful extensions: 1124
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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