Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f07
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.23 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.23 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 32  RSVSREPSPGPCARMPPTLPTKGTPAPQP 118
           R+ +R  S G C R P T  +     PQP
Sbjct: 36  RNSNRSESSGYCGRRPSTFGSSNEALPQP 64


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 32  RSVSREPSPGPCARMPPTLPTKGTPAPQP 118
           R+ +R  S G C R P T  +     PQP
Sbjct: 36  RNSNRSESSGYCGRRPSTFGSSNEALPQP 64


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 41  SREPSPGPCARMPPTLPTKGTPAPQP 118
           S  P P P     P  P +G+P P P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSP-PNP 42


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 86   LPTKGTPAPQPP 121
            +P  G+P P PP
Sbjct: 1851 IPVSGSPEPPPP 1862


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 194 RWAYFMPNADDIEMLRRLSESGEY 123
           +W YF  N    E  +   +SGEY
Sbjct: 37  QWKYFDYNFGSDEKRQAAIQSGEY 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,559
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)