Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f06
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.3  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   4.0  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   5.2  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   5.2  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   5.2  
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    25   6.9  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   9.1  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   9.1  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = -2

Query: 406 FGFLTCLTSIPLLANEGTSALQLTEDFPEHSRIPLEKLWDISPIKNEQYQMRFV 245
           +   T L +I L+ N  T  +   E+FP  + +P+    ++S ++   Y +R +
Sbjct: 148 YSCFTKLPAISLVYNPKTPLISQYEEFPLDTAVPITVFKNLSSLEIRGYDIRSI 201


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -2

Query: 556 TNVCSNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDAFENELKIYG 410
           +N+  +  +  + LD +   +  +L++ GMD+      D   N ++ YG
Sbjct: 5   SNISISAVKLPQDLDDFKMLVQEYLQEFGMDLTFQNVDDELANPMRKYG 53


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 541 NVEQFEEALDHYYNFLDYFL 482
           N EQ+ +A  +Y + LDYF+
Sbjct: 22  NAEQYPDAYKYYQSALDYFM 41


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 472 GMDVAIVFPRDAF-ENELKIYGKFGFLTCLTSIPLLANEGTSALQLTEDF 326
           G DV    P   F E++  I    GF    + +PL+ NE  + L  + DF
Sbjct: 112 GKDVVYDIPNHVFMEHKKFIKSGLGFSQFRSYVPLILNEMDAFLSTSPDF 161


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +3

Query: 321 SGKSSVNCNALVPSFAKSGIDVRHVRNPN-----FPYILSSFSKASLGKTIATSMPMSF 482
           SG S++N     P+F  SG++ R V   N     FP  L+    AS    +ATS P SF
Sbjct: 175 SGNSTINGMMTTPNFLSSGVNSRSVDEFNNSSSGFPSSLNGIPIAS--PPLATS-PTSF 230


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 398 SYMPDVNSALSKRGDQCVTID 336
           SY PD+N+A++KR  + +  D
Sbjct: 123 SYFPDINAAITKRNHKLLDHD 143


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 34  YIYFRYLVPATQVLYELITGPVKVA*LLVNIYLFIISL 147
           Y Y+  + P+T++L E+   P +   LL   Y F+I+L
Sbjct: 182 YKYYWRVEPSTKLLCEVNKDPFRQLRLLNKTYGFVITL 219


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 547 CSNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFP 446
           C+  E  +  L HY NF D+F +++  +   V P
Sbjct: 117 CNLSELKDPDLTHYRNFQDFFCRELRPETRPVDP 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,144
Number of Sequences: 5004
Number of extensions: 47997
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)