Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f06
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81142-10|CAB03503.2| 384|Caenorhabditis elegans Hypothetical p... 38 0.005
Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical pr... 29 2.1
U49830-15|AAK31473.2| 166|Caenorhabditis elegans Hypothetical p... 29 2.1
AC024749-2|AAF60435.2| 444|Caenorhabditis elegans Hypothetical ... 29 3.7
Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical p... 28 4.9
Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical p... 28 4.9
Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical p... 28 4.9
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 27 8.5
>Z81142-10|CAB03503.2| 384|Caenorhabditis elegans Hypothetical
protein ZK1037.4 protein.
Length = 384
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKDMG 470
+D+Q SP+ DL L CT+V + + LDHYYN L LK+ G
Sbjct: 264 VDWQATHRGSPMEDLHHILSTCTSVQNRKTFTKPLLDHYYNKLKVGLKEKG 314
>Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical
protein C29F7.2 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.40
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPR 443
ID+Q+ SP+ D + CT+V + + LD+Y++ L L+ G V + + R
Sbjct: 274 IDWQITHRGSPMEDFHHIMSTCTSVENRKNLTKPLLDYYFDKLSSGLEAKG--VKMPWTR 331
Query: 442 DAFENELK 419
+ E E K
Sbjct: 332 EEIEEEYK 339
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 31.1 bits (67), Expect = 0.69
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = -2
Query: 559 CTNVCSNVEQFEEALDHYY--NFLDYFLKDMGMDVAIVFPRDAFENE---LKI-YGKFGF 398
CT ++ F+E +DH + + Y + + A+++ + FE E LK+ K
Sbjct: 279 CTACSVTIKSFQEVMDHILLTDHVKYLVNFGFSEKALLWWKKRFETEQEQLKVQVPKVDE 338
Query: 397 LTCLTSIPLLANEGTSALQLTEDFPEHSRIPLEKLWDISPIKN--EQYQMRFVNALRLAV 224
+SIP + TS L P R+PL +SP+ + Q F++ LR ++
Sbjct: 339 KPTESSIPTKTSNVTSQLNKPSPSPHTQRVPL-----LSPLASATRSSQKMFIDTLR-SI 392
Query: 223 DANL 212
D L
Sbjct: 393 DVKL 396
>Z92827-1|CAB07326.1| 394|Caenorhabditis elegans Hypothetical
protein C29F7.1 protein.
Length = 394
Score = 30.7 bits (66), Expect = 0.91
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPR 443
ID+Q+ SP+ DL L T+V + + + LDHY+ L L++ G V + + R
Sbjct: 274 IDWQVGHQGSPMEDLHRILSTGTSVENRNKLTKPLLDHYFEKLSAGLEEKG--VKMPWTR 331
Query: 442 DAFENELKIYGKFGFLTCLTSIPLLANE--GTSALQLTEDFPEHSRI 308
+ + E +G SI + +N +S + T+ P+ +RI
Sbjct: 332 EEVDEEYNHCFSYG-----ASITIFSNGIWSSSPILQTDGKPDPARI 373
>Z74038-6|CAA98496.1| 423|Caenorhabditis elegans Hypothetical
protein F58B4.5 protein.
Length = 423
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKDM-GMDVAIVF 449
IDFQ + +P D+ C + E+ + L+ YYN F+ ++ GMDV F
Sbjct: 297 IDFQTVSITTPAQDVGRLFASCLSTKDRREKADFLLEEYYN---TFVNELDGMDVPYTF 352
>Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical
protein T07G12.3 protein.
Length = 638
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 422 EFVFESVSWEDNCDVHAHVFQKII 493
EF+ E+V WEDN +V+ H+ +II
Sbjct: 141 EFL-ETVCWEDNIEVYGHIHTQII 163
>U49830-15|AAK31473.2| 166|Caenorhabditis elegans Hypothetical
protein C33F10.1 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 625 AIDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEA 518
AI + +R A + +LFLF+ T V +VE FEE+
Sbjct: 92 AIHVKSMRIAGFIAQSILFLFVYTIVTMDVENFEES 127
>AC024749-2|AAF60435.2| 444|Caenorhabditis elegans Hypothetical
protein Y16E11A.1 protein.
Length = 444
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = -1
Query: 425 TQNIRKVRISYMPDVNSALSKRGDQCVTIDRRFSRT*SNTIRKTMGHFTYQKRAVSDEIC 246
+ + ++ RIS S + D + RF+ IRK G+F + R DE C
Sbjct: 215 SNSCKEFRISETVKNISRFIDKEDYFTDTEERFNIPWRMGIRKRNGYFEFYLRCEKDE-C 273
Query: 245 ERFKTSCRCESYLNCTSLN 189
E K S E L S N
Sbjct: 274 ENRKWSIETELTLKLISCN 292
>Z68227-15|CAJ80810.1| 414|Caenorhabditis elegans Hypothetical
protein F49C12.7c protein.
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKD 476
IDFQMI TDL + C + E+ L HY++ L K+
Sbjct: 291 IDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLKHYFDCLTKHCKE 339
>Z68227-14|CAJ80809.1| 448|Caenorhabditis elegans Hypothetical
protein F49C12.7b protein.
Length = 448
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKD 476
IDFQMI TDL + C + E+ L HY++ L K+
Sbjct: 321 IDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLKHYFDCLTKHCKE 369
>Z68227-13|CAA92511.1| 444|Caenorhabditis elegans Hypothetical
protein F49C12.7a protein.
Length = 444
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 622 IDFQMIRCASPVTDLMLFLFMCTNVCSNVEQFEEALDHYYNFLDYFLKD 476
IDFQMI TDL + C + E+ L HY++ L K+
Sbjct: 321 IDFQMIHFGLAATDLARVMNTCLSPEERHANKEKYLKHYFDCLTKHCKE 369
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 553 NVC-SNVEQFEEALDHYYNFLDYFLKDMGMDVAIVFPRDA 437
++C + +E EE L N YF+ D GM +++V P DA
Sbjct: 172 SICFARLENEEECLGGR-NDTKYFITDSGMQISLVNPSDA 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,115
Number of Sequences: 27780
Number of extensions: 258538
Number of successful extensions: 729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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