Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f06
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          28   0.087
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.27 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.81 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 0.087
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 517 LDHYYNF---LDYFLKDMGMDVAIVFPRDAF 434
           L+H YN    L+YF++D+G++    F R AF
Sbjct: 210 LNHDYNLENKLNYFIEDIGLNTYYFFLRQAF 240


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 517 LDHYYNF---LDYFLKDMGMDVAIVFPRDAF 434
           L+H YN    L YF++D+G++    F R AF
Sbjct: 210 LNHDYNLENKLIYFIEDIGLNTYYFFLRQAF 240


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 574 LFLFMCTNVCSN 539
           LFLF CTN C N
Sbjct: 301 LFLFACTNSCMN 312


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 413 VYFEFVFESVSWEDNCDVHAHVFQKI 490
           V   F+   + WE  CDV++ VF  I
Sbjct: 114 VISSFMERMIGWEIGCDVYS-VFGSI 138


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 413 VYFEFVFESVSWEDNCDVHAHVFQKI 490
           V   F+   + WE  CDV++ VF  I
Sbjct: 114 VISSFMERMIGWEIGCDVYS-VFGSI 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,024
Number of Sequences: 438
Number of extensions: 3546
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)