Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13f04
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 257 5e-69
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 257 5e-69
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 257 5e-69
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 257 5e-69
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 257 5e-69
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 257 5e-69
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 256 8e-69
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 256 8e-69
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 256 8e-69
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 250 5e-67
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 245 3e-65
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 136 1e-32
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 111 5e-25
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 108 4e-24
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 95 3e-20
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 87 1e-17
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 73 3e-13
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 73 3e-13
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 48 8e-06
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.59
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.59
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.59
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 31 0.78
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 31 0.78
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 31 0.78
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 5.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.3
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 28 7.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.3
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 28 7.3
AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical ... 28 7.3
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 210 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 269
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 270 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 329
Query: 238 KCF 230
KCF
Sbjct: 330 KCF 332
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 188 ASSSSLEKSYELPDGQVITVGNER 211
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 240 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 299
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 300 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 359
Query: 238 KCF 230
KCF
Sbjct: 360 KCF 362
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 218 ASSSSLEKSYELPDGQVITVGNER 241
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 257 bits (630), Expect = 5e-69
Identities = 118/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 256 bits (628), Expect = 8e-69
Identities = 117/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 256 bits (628), Expect = 8e-69
Identities = 117/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 256 bits (628), Expect = 8e-69
Identities = 117/123 (95%), Positives = 122/123 (99%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 373
Query: 238 KCF 230
KCF
Sbjct: 374 KCF 376
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 250 bits (613), Expect = 5e-67
Identities = 116/123 (94%), Positives = 121/123 (98%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPEA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADR
Sbjct: 254 ERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADR 313
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEITALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 314 MQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 238 KCF 230
KCF
Sbjct: 373 KCF 375
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVIT+G +
Sbjct: 232 ASSSSLEKSYELPDGQVITVGNER 255
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 245 bits (599), Expect = 3e-65
Identities = 112/123 (91%), Positives = 117/123 (95%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RFRCPE LFQP+F+GME GIHETTY SIMKCDVDIRKDLYANTVLSGGT+M+PGIADR
Sbjct: 253 ERFRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADR 312
Query: 418 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 239
MQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR
Sbjct: 313 MQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 372
Query: 238 KCF 230
KCF
Sbjct: 373 KCF 375
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3
Query: 666 ASSSXLEKSYELPDGQVITIGKRK 595
ASSS LEKSYELPDGQVITIG +
Sbjct: 231 ASSSSLEKSYELPDGQVITIGNER 254
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 136 bits (330), Expect = 1e-32
Identities = 61/121 (50%), Positives = 84/121 (69%)
Frame = -2
Query: 592 FRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 413
FR PE LF+P +G E G+ SIMKCDVD+R+ LY+N VLSGGTT++ G DR+
Sbjct: 254 FRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLL 313
Query: 412 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 233
E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G S +H++
Sbjct: 314 GEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRF 373
Query: 232 F 230
F
Sbjct: 374 F 374
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 111 bits (267), Expect = 5e-25
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEA-----CGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYP 434
+R + PE LF +L E + + S D+DIR L++N ++GG ++
Sbjct: 306 ERIKLPECLFDLGYLKAEGKKDGLMTVAQMAAASANLADIDIRPTLFSNVTVTGGNSLIL 365
Query: 433 GIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 263
G +R+ + P T+K+++ A P ERKY WIGGSIL SL TFQQMW+SK EYDE
Sbjct: 366 GFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDE 425
Query: 262 SGPSIVHRKC 233
SG SIV +KC
Sbjct: 426 SGKSIVEKKC 435
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 108 bits (259), Expect = 4e-24
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 13/127 (10%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 419
+RF PE LFQP + +E G+ E + I D+D R D Y + VLSGGTTMYPG+ R
Sbjct: 257 ERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSR 316
Query: 418 MQKEITAL-----------APSTMKIKIIAPPERKYSVWIGGSILASL--STFQQMWISK 278
++KE+ L A KI+I APP RK+ V++GG++LA+L Q W+SK
Sbjct: 317 LEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSK 376
Query: 277 QEYDESG 257
+EY+E G
Sbjct: 377 KEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 95.5 bits (227), Expect = 3e-20
Identities = 39/108 (36%), Positives = 71/108 (65%)
Frame = -2
Query: 595 RFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 416
RF C E LF+P G++ G+H+ + +I++C +D R+ LY N L+GG ++ PGIA+++
Sbjct: 432 RFLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKL 491
Query: 415 QKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 272
++E++ + P+T+ ++ P R + ++G I+AS STF+ IS Q+
Sbjct: 492 EQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 86.6 bits (205), Expect = 1e-17
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 17/134 (12%)
Frame = -2
Query: 598 KRFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIAD 422
+RF PE F P F E I +T I +C +D+R+ LY N VLSGG+TM+ A
Sbjct: 281 ERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFAR 340
Query: 421 RMQKEITALA----------------PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 290
++Q+++ L+ P + +++I+ ++Y+VW GGS+LAS S F Q+
Sbjct: 341 KLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQV 400
Query: 289 WISKQEYDESGPSI 248
+K EY E GPSI
Sbjct: 401 SHTKAEYMERGPSI 414
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Frame = -2
Query: 610 HRKTKRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 431
H +RF PE LF PS + ++ CG+ E SI +C +R L N ++ GG++ +PG
Sbjct: 264 HLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPG 323
Query: 430 IADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 260
+R+++E+ ++ P+ + + + P+ W G L L+ + WI+++++DE
Sbjct: 324 FRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDER 379
Query: 259 GPSIVHRKCF*T 224
G S+ F T
Sbjct: 380 GDSLEFSNFFQT 391
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Frame = -2
Query: 610 HRKTKRFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 431
H +RF PE LF PS + ++ CG+ E SI +C +R L N ++ GG++ +PG
Sbjct: 264 HLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPG 323
Query: 430 IADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 260
+R+++E+ ++ P+ + + + P+ W G L L+ + WI+++++DE
Sbjct: 324 FRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDER 379
Query: 259 GPSIVHRKCF*T 224
G S+ F T
Sbjct: 380 GDSLEFSNFFQT 391
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Frame = -2
Query: 511 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK 347
+ KC +D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K
Sbjct: 198 VSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIK 257
Query: 346 ----YSVWIGGSILASL-STFQQMWISKQEY 269
+ W+G S+L SL T ++ ++ +E+
Sbjct: 258 NTPLFVSWLGASLLGSLRETIERKSLTLEEW 288
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 335 PYGVLPLWRSNDLNLHCRWGESCD 406
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 335 PYGVLPLWRSNDLNLHCRWGESCD 406
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 335 PYGVLPLWRSNDLNLHCRWGESCD 406
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical protein
Y76A2B.1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 673 TGCIQQLPREVLRTSRRSGHHHRKTKRFRCPEALFQPSFLGMEACGIHET 524
T Q P + S HHH + + + P ++ PS M++CG+ T
Sbjct: 971 TNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVPTPSSRNMQSCGVEST 1020
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 673 TGCIQQLPREVLRTSRRSGHHHRKTKRFRCPEALFQPSFLGMEACGIHET 524
T Q P + S HHH + + + P ++ PS M++CG+ T
Sbjct: 971 TNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVPTPSSRNMQSCGVEST 1020
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 673 TGCIQQLPREVLRTSRRSGHHHRKTKRFRCPEALFQPSFLGMEACGIHET 524
T Q P + S HHH + + + P ++ PS M++CG+ T
Sbjct: 971 TNSAAQTPSTSVTHSTTEKHHHHQHHQHQEPTSVPTPSSRNMQSCGVEST 1020
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 661 QQLPREVLRTSRRSGHHHRKTKRFRCP 581
QQ + R RS HHH++ +R R P
Sbjct: 192 QQQQQLAFRPRHRSSHHHQEPRRHRAP 218
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 171 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 263
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 274 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 173
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 171 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 263
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 355 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 194
+RK V G A +S F + K++ DE GPS RK S PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
>AL021346-1|CAA16154.1| 823|Caenorhabditis elegans Hypothetical
protein H37A05.1 protein.
Length = 823
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 636 ELPDGQVITIGKRKDSVAQRLSSNPRSWVWKLAAST 529
ELP+ + K++D A++ +S SW W+ + ST
Sbjct: 342 ELPETREQNKRKKQDEDAEKSTSRWSSWFWRSSTST 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,474,331
Number of Sequences: 27780
Number of extensions: 358989
Number of successful extensions: 1204
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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