Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13f01
         (169 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.20 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   4.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   5.6  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    18   9.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    18   9.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    18   9.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 0.20
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = -3

Query: 164 HFFHSNR--ISWNSCNN-WN 114
           +FF S R  + W SCNN WN
Sbjct: 87  YFFMSMRSELPWGSCNNYWN 106


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 79  NNHFSKNHH 53
           NNH++ NH+
Sbjct: 422 NNHYNHNHN 430


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 148 TGFHGIHVIIG 116
           TG HG+H + G
Sbjct: 132 TGLHGLHGLHG 142


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 140 SWNSCNNW 117
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 140 SWNSCNNW 117
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 140 SWNSCNNW 117
           SWN  N+W
Sbjct: 695 SWNKWNDW 702


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 2   SYYIYKMSISSCS 40
           S ++YK S SSC+
Sbjct: 960 SSFLYKSSESSCN 972


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 164 HFFHSNRISWNSCNNWN 114
           ++ +SN  ++N+ NN+N
Sbjct: 88  NYNYSNYNNYNNNNNYN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,476
Number of Sequences: 438
Number of extensions: 441
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)