Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e23
         (124 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical p...    25   7.4  
AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical ...    25   7.4  
AJ561205-1|CAE47483.1|   73|Caenorhabditis elegans NAS-12 protein.     25   7.4  

>Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 89  NKYFEAFIINSCKRE*RLCQY 27
           N +++  +I SC++  RLC Y
Sbjct: 307 NPFYKQMMIKSCQKTCRLCSY 327


>AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 89  NKYFEAFIINSCKRE*RLCQY 27
           N +++  +I SC++  RLC Y
Sbjct: 307 NPFYKQMMIKSCQKTCRLCSY 327


>AJ561205-1|CAE47483.1|   73|Caenorhabditis elegans NAS-12
          protein.
          Length = 73

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 89 NKYFEAFIINSCKRE*RLCQY 27
          N +++  +I SC++  RLC Y
Sbjct: 29 NPFYKQMMIKSCQKTCRLCSY 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,834
Number of Sequences: 27780
Number of extensions: 34062
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,740,198
effective HSP length: 21
effective length of database: 12,156,818
effective search space used: 230979542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)