Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e23
         (124 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   2.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   2.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   2.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.6  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
          precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 8  SE*QKKNIDTIFIL 49
          S+ ++KN+DT+ +L
Sbjct: 28 SKEERKNVDTVLVL 41


>AY939856-1|AAX33236.1|  223|Apis mellifera venom
          carbohydrate-rich protein precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 8  SE*QKKNIDTIFIL 49
          S+ ++KN+DT+ +L
Sbjct: 28 SKEERKNVDTVLVL 41


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2
          protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +2

Query: 8  SE*QKKNIDTIFIL 49
          S+ ++KN+DT+ +L
Sbjct: 28 SKEERKNVDTVLVL 41


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/13 (30%), Positives = 10/13 (76%)
 Frame = -2

Query: 39  IVSIFFFCYSDLF 1
           I+++FF C++  +
Sbjct: 265 IIAVFFICWTPYY 277


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 122 VLF*MYFFWKGNKYFEAFIINS 57
           VL  +YF  K +KY E  I+ +
Sbjct: 78  VLNVLYFINKNDKYEENTILTT 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,147
Number of Sequences: 438
Number of extensions: 349
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 21
effective length of database: 137,145
effective search space used:  2605755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)