Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e22
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065963-1|BAC06175.1|  318|Homo sapiens seven transmembrane hel...    33   1.4  

>AB065963-1|BAC06175.1|  318|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 318

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 27/88 (30%), Positives = 42/88 (47%)
 Frame = +3

Query: 33  FILHISQFYYIVENFKSFTVQIIVVAIFELRTSSYFELYHLMFVPHDIKCKYHNKSFTVQ 212
           F+L +   +YIV    +  + ++V +  +L T  YF L +L FV  DI   Y + +    
Sbjct: 32  FVLFL--LFYIVIMVGNLLIFLMVFSDPQLHTPMYFFLSNLSFV--DI--AYSSATAPKM 85

Query: 213 IVDAIFELRTSSYFELYHLMFVPHDIKC 296
           I D + E +T SY+     MF  H   C
Sbjct: 86  IADFVSEKKTISYWGCITQMFTFHFFGC 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,937,208
Number of Sequences: 237096
Number of extensions: 1334427
Number of successful extensions: 1749
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)