Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e22
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   0.32 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.97 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 111 IFELRTSSYFELYHLMFVPHDIKCKYHNKSFTVQIVDAIFELRTS 245
           I++    S F + H  F P  +  KY       Q  D IF +  S
Sbjct: 337 IYDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALS 381



 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 225 IFELRTSSYFELYHLMFVPHDIKCKYHNKSFTVQIVDAIFELRTS 359
           I++    S F + H  F P  +  KY       Q  D IF +  S
Sbjct: 337 IYDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALS 381



 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +3

Query: 339 IFELRTSSYFELYHLMFIPHDIKCKYHNKSFTVQIVDAIFELRTS 473
           I++    S F + H  F P  +  KY       Q  D IF +  S
Sbjct: 337 IYDFFKDSSFRIQHHFFYPDPLASKYELHGLKFQWTDGIFGMALS 381


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 592 YNNHCFRVIISSMAHLIRNCTCI 660
           +N+  FR++I+++  LI+N  CI
Sbjct: 392 FNDVNFRILIANVNDLIKNTRCI 414


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  LYS*KFQVIHCSNYSRCH 112
           LY  K Q+IH  NY+ CH
Sbjct: 367 LYLTKVQLIHAGNYT-CH 383


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 137 VTTSSKFKNGNDYNLNSE*LEIFNYIIKL 51
           ++ + K+ N N+YN  ++ L   NYII +
Sbjct: 85  LSNNYKYSNYNNYNNYNKKLYYKNYIINI 113


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 577 INTD-TYNNHCFRVIISSMAHLIRNCTC 657
           IN D  +N+  FR++ +++  L+RN  C
Sbjct: 392 INNDFNFNDVNFRILGANVDDLMRNTRC 419


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 577 INTD-TYNNHCFRVIISSMAHLIRNCTCI 660
           +N D  +++  FR++ +++  LIRN  C+
Sbjct: 387 VNDDFNFDDVNFRILGANVKELIRNTHCV 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,789
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)