Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e20
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.0  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    26   5.3  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   9.2  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   9.2  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.2  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.2  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   9.2  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.2  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -2

Query: 278 DDYDQNQLQKNNIEKK*TSTNI*YR*KRICYSIIADL-----HYIR-IINHNL 138
           DDY  N   ++NIEKK     +  R +R   S++  L     H++R II +NL
Sbjct: 617 DDYSSNASGRDNIEKKGIFRTVSQRHRRQLSSLMHQLEATQPHFVRCIIPNNL 669


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 545 TDPTLKFY---KSHATRNITPTMDGKVPIYDFDSWSKHHYSDVFAKQKYD 405
           TD    FY   K+HA+ N       K+ ++ F+SW+    S    K KY+
Sbjct: 110 TDKCKSFYEKEKNHASHNAQ-----KLDVWIFNSWTNSELSRWLIKNKYE 154


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 484 TGKFQFMTLIVGPNTIIQMYLQSRNMIRKWYETHKKNN 371
           TG F F  LI GP  + +M  +S + +RK +E  +KN+
Sbjct: 282 TGAFFF--LINGPEIMSKMAGESESNLRKAFEEAEKNS 317


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = -2

Query: 536 TLKFYKSHAT-RNITPTMDGKVPIYDFDSWSKHHYSDVFAKQKYDKEMVRNSQEKQQKI 363
           T K+Y      +        K P+  F S S+H  ++VF +   D E V     K + I
Sbjct: 511 TSKYYSGRKNFKKFQKKASQKAPLQAFLSLSEHKKTEVFDQDDTDLEPVPRLMSKVESI 569


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 573 YGI--QTRTRTYRSYPKVLQVPCNSQYHTHHGRESSN 469
           YG+  Q +  + R YP  L     + Y + HG++S N
Sbjct: 250 YGLVYQRKITSKRFYPTRLATGLTTDYRSLHGKQSEN 286


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 470 IYDFDSWSKHHYSDVFAKQ-KYDKEMVRNS 384
           I DFD WSK   S++F +Q  Y   ++ N+
Sbjct: 827 ILDFDLWSKAPNSNLFVQQLGYIVSLIENN 856


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 461 FDSWSKHHYSDVFAKQKYDKEMVRNSQE 378
           F+SW +     +F++ K D + V  SQE
Sbjct: 471 FESWFRDSSDHIFSRVKDDDKFVYQSQE 498


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 283 PLSNTAINNPPMIITSQIIPSCLVDS 360
           PLS T++ NP +I +++ +PS  + +
Sbjct: 59  PLSPTSLKNPCLIFSAKNVPSISIQA 84


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 587 ENTSRMEYKPEPEPTDPTLKF 525
           E +  +EY+ +P PT PT +F
Sbjct: 98  EFSEELEYQTKPHPTVPTCQF 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,348
Number of Sequences: 5004
Number of extensions: 46445
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)