Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e20
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0537 - 23019590-23020126,23020841-23021022,23021141-230213...    30   1.8  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    28   5.4  
01_05_0536 - 23011618-23011635,23011871-23012052,23012160-230123...    28   5.4  
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826...    28   7.2  

>01_05_0537 -
           23019590-23020126,23020841-23021022,23021141-23021377,
           23021460-23021567,23022107-23022257
          Length = 404

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 421 QSRNMIRKWYETHKKNNRKY 362
           Q++ +IRKW ET+ K NR++
Sbjct: 94  QAKEIIRKWLETYDKRNREF 113


>04_01_0293 +
           3881375-3883698,3906619-3907636,3907820-3908309,
           3914729-3914823,3914854-3915213
          Length = 1428

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 536 TLKFYKSHATRNITPTMDGKVPIYDFDSWSKHHYSDVFAK-QKYDKEMVRNSQEKQQKIL 360
           T  F K+H    +      +       S S   Y   F +  +Y  E VRN +E+Q+K L
Sbjct: 133 TAAFQKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQEKFL 192

Query: 359 ESTKQE 342
           E    E
Sbjct: 193 EGLNDE 198


>01_05_0536 -
           23011618-23011635,23011871-23012052,23012160-23012396,
           23012480-23012593,23012806-23013025,23013143-23013229
          Length = 285

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 421 QSRNMIRKWYETHKKNNRKY 362
           Q + ++RKW ET+ K NR++
Sbjct: 148 QEKEIMRKWLETYDKKNREF 167


>10_05_0026 +
           8262237-8262899,8263300-8263509,8263599-8265480,
           8265508-8265704,8275672-8275824
          Length = 1034

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 536 TLKFYKSHATRNITPTMDGKVPIYDFDSWSKHHYSDVFAK-QKYDKEMVRNSQEKQQKIL 360
           T  F K+H    +      +       S S   Y   F +  +Y  E VRN +E+Q+K L
Sbjct: 332 TAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFL 391

Query: 359 ESTKQE 342
           E    E
Sbjct: 392 EGLNDE 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,222
Number of Sequences: 37544
Number of extensions: 245060
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)