Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e20
(639 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005056-1|AAH05056.1| 226|Homo sapiens Williams Beuren syndrom... 31 2.6
AK058113-1|BAB71671.1| 226|Homo sapiens protein ( Homo sapiens ... 31 2.6
AF412025-1|AAM62307.1| 226|Homo sapiens Williams-Beuren syndrom... 31 2.6
AC073846-6|AAS07471.1| 226|Homo sapiens unknown protein. 31 2.6
S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone oxidoredu... 30 6.0
BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase (ubi... 30 6.0
AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone dehydro... 30 6.0
AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone oxidore... 30 6.0
>BC005056-1|AAH05056.1| 226|Homo sapiens Williams Beuren syndrome
chromosome region 18 protein.
Length = 226
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = -2
Query: 638 GNIQLKKMYDRGLLVGRENTS---RMEYKPEPEPTDPTLKFYKSHATRNITPTMDGKVPI 468
G+ L++ YDRGLL + R P P+P P S + +
Sbjct: 102 GSATLRRKYDRGLLSDEDLRGPGVRPSRTPAPDPGSPRTPPPTSRTHDGSRASPGANRTM 161
Query: 467 YDFDSWSKHHYSDVFAKQ---KYDKEMVRNSQE 378
++FD++ + HY + ++ + +E +R QE
Sbjct: 162 FNFDAFYQAHYGEQLERERRLRARREALRKRQE 194
>AK058113-1|BAB71671.1| 226|Homo sapiens protein ( Homo sapiens
cDNA FLJ25384 fis, clone TST02292. ).
Length = 226
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = -2
Query: 638 GNIQLKKMYDRGLLVGRENTS---RMEYKPEPEPTDPTLKFYKSHATRNITPTMDGKVPI 468
G+ L++ YDRGLL + R P P+P P S + +
Sbjct: 102 GSATLRRKYDRGLLSDEDLRGPGVRPSRTPAPDPGSPRTPPPTSRTHDGSRASPGANRTM 161
Query: 467 YDFDSWSKHHYSDVFAKQ---KYDKEMVRNSQE 378
++FD++ + HY + ++ + +E +R QE
Sbjct: 162 FNFDAFYQAHYGEQLERERRLRARREALRKRQE 194
>AF412025-1|AAM62307.1| 226|Homo sapiens Williams-Beuren syndrome
critical region protein 18 protein.
Length = 226
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = -2
Query: 638 GNIQLKKMYDRGLLVGRENTS---RMEYKPEPEPTDPTLKFYKSHATRNITPTMDGKVPI 468
G+ L++ YDRGLL + R P P+P P S + +
Sbjct: 102 GSATLRRKYDRGLLSDEDLRGPGVRPSRTPAPDPGSPRTPPPTSRTHDGSRASPGANRTM 161
Query: 467 YDFDSWSKHHYSDVFAKQ---KYDKEMVRNSQE 378
++FD++ + HY + ++ + +E +R QE
Sbjct: 162 FNFDAFYQAHYGEQLERERRLRARREALRKRQE 194
>AC073846-6|AAS07471.1| 226|Homo sapiens unknown protein.
Length = 226
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = -2
Query: 638 GNIQLKKMYDRGLLVGRENTS---RMEYKPEPEPTDPTLKFYKSHATRNITPTMDGKVPI 468
G+ L++ YDRGLL + R P P+P P S + +
Sbjct: 102 GSATLRRKYDRGLLSDEDLRGPGVRPSRTPAPDPGSPRTPPPTSRTHDGSRASPGANRTM 161
Query: 467 YDFDSWSKHHYSDVFAKQ---KYDKEMVRNSQE 378
++FD++ + HY + ++ + +E +R QE
Sbjct: 162 FNFDAFYQAHYGEQLERERRLRARREALRKRQE 194
>S82655-1|AAB46797.2| 102|Homo sapiens NADH-ubiquinone
oxidoreductase B22 subunit protein.
Length = 102
Score = 30.3 bits (65), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 479 KVPIYDFDSW---SKHHYSDVFAKQKYDKEMVRNSQEKQQKILE 357
KVP + D W K Y D FAK++ K++ R S E++ K L+
Sbjct: 21 KVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQ 64
>BC007672-1|AAH07672.1| 179|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 9, 22kDa protein.
Length = 179
Score = 30.3 bits (65), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 479 KVPIYDFDSW---SKHHYSDVFAKQKYDKEMVRNSQEKQQKILE 357
KVP + D W K Y D FAK++ K++ R S E++ K L+
Sbjct: 98 KVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQ 141
>AF261090-1|AAF99683.1| 179|Homo sapiens NADH-ubiquinone
dehydrogenase 1 beta subcomplex protein.
Length = 179
Score = 30.3 bits (65), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 479 KVPIYDFDSW---SKHHYSDVFAKQKYDKEMVRNSQEKQQKILE 357
KVP + D W K Y D FAK++ K++ R S E++ K L+
Sbjct: 98 KVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQ 141
>AF044956-1|AAD42057.1| 179|Homo sapiens NADH:ubiquinone
oxidoreductase B22 subunit protein.
Length = 179
Score = 30.3 bits (65), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 479 KVPIYDFDSW---SKHHYSDVFAKQKYDKEMVRNSQEKQQKILE 357
KVP + D W K Y D FAK++ K++ R S E++ K L+
Sbjct: 98 KVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQ 141
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,662,795
Number of Sequences: 237096
Number of extensions: 1558957
Number of successful extensions: 3155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3155
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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