Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e19
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    33   0.056
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.098
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    32   0.098
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    27   4.9  
Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical ...    26   6.4  
AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    26   6.4  
AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical...    26   6.4  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    26   6.4  
Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    26   8.5  
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -3

Query: 270 LCWLWPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 91
           LC+LW  L  T T   TT  T+   P  TT      N +TT     T+P  + T+++PL+
Sbjct: 179 LCYLWVPL--TTTTTTTTTTTTTTSPMNTTTTTVLINGTTTT----TVPTNETTTTVPLN 232


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 258 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 100
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 258 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSL 100
           WP   ET     TT  T+  +P  TT+  T T  +T    T T   A  T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 232 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 146
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 204 LILPKITTLMETATNLSTTVHITWTLPKAD 115
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 95
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
            C27B7.4 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 172  NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 83
            NGY   +NG    +P Q  P   P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175


>AF025471-4|AAB71063.1|  151|Caenorhabditis elegans Hypothetical
           protein R52.6 protein.
          Length = 151

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 243 ETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 127
           E  T ++TT  TS +  K+   M  AT       + WTL
Sbjct: 51  EETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -2

Query: 253 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PFPG 86
           N Q     P +  P + N P  +     GY   P         PP+G  Y++P   P+  
Sbjct: 35  NPQPGASFPPNMNP-VTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPYKP 93

Query: 85  ARGGK 71
            +GGK
Sbjct: 94  GKGGK 98


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = -2

Query: 244 GNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 77
           G G  P    P  V PP  Y   P  +G    DNGA     P G PY    P P   G
Sbjct: 357 GGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYPSDVPAPYPSG 411


>Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 244 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 125
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical
           protein F17A2.3 protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 249 LKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLS 91
           +K     LL     +  +P+ +  +   T  ST  H+T+ LP+   T++LP+S
Sbjct: 330 IKSKEHPLLEDQNFTACIPEASPALVPLTTASTPQHLTFKLPQ---TAALPMS 379


>AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 244 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 125
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 244 GNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 125
           GN   P ++   P  +N PK    + NG +P+DN   YV+ P
Sbjct: 47  GNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86


>AF016448-14|AAB65960.2|  304|Caenorhabditis elegans Hypothetical
           protein F41E6.12 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 204 LILPKITTLMETATNLSTTVHITWTLPKADLTSSL 100
           LILP +TTL   +T  STT   T T P    T S+
Sbjct: 60  LILPPMTTL-PPSTTTSTTAEPTTTTPLKSSTDSV 93


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 301 KMKFFMIFVLALLAMANAQGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDN 149
           KM+F  + +LAL  +AN     +  I +  R   +N     +P  +G+E ++N
Sbjct: 4   KMRFGQLLLLALFGVANGYREQFNTISSSVRQEKINDNHLDSPRSDGHELMEN 56


>Z77136-2|CAB00884.3|  670|Caenorhabditis elegans Hypothetical
           protein ZC376.2 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 187 YNPNGNGYEPIDNGAYYVDPPQGRPYF-KPTP 95
           Y+P GN    +  G  YV+PP G   F KP P
Sbjct: 36  YSPLGNQTGIVFFGVPYVEPPVGNLRFRKPRP 67


>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 235 YEPIDNRPYIVN--PPKDYNPNGNGYEPIDNGAYYVDPP 125
           Y P    PY     PP  +N  G+G      GAY+  PP
Sbjct: 8   YNPAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPP 45


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = -2

Query: 235 YEPIDNRPYIVN--PPKDYNPNGNGYEPIDNGAYYVDPP 125
           Y P    PY     PP  +N  G+G      GAY+  PP
Sbjct: 8   YNPAYQNPYPNQGPPPPGFN-TGDGQNQNQGGAYFSPPP 45


>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = -2

Query: 241 NGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 122
           N Y+P++    +VNP K    + NG+  + + + A Y   VDPP+
Sbjct: 827 NAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,698
Number of Sequences: 27780
Number of extensions: 186159
Number of successful extensions: 521
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)