Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e18
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.98 
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    29   3.0  

>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 330 FQYFTKLILDLIMSIXGIATFSRYQIIVNYMKI*INTSI 446
           FQ+  K  L  ++SI  I+TFSR +I  +Y +I ++ SI
Sbjct: 155 FQFQNKFFLRHLISICRISTFSRSRIRFSYSRIWLHISI 193


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 652 FLKIXRDVEPNIFKFKLKXATGFHIKNITIMHFSL*DYNVRDATDGTKFISILRLFIYII 473
           +L+  RD +P      +K A   ++  +T+   S   + +    DG   ++ +RL I + 
Sbjct: 104 YLETSRDTKPRKNVVNIKTACSLNVSPVTVCIGSQAAFAIFGLADGNLLVTPIRLLIDVT 163

Query: 472 W 470
           W
Sbjct: 164 W 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,443
Number of Sequences: 27780
Number of extensions: 155777
Number of successful extensions: 346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)