Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e18
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.6  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   8.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   8.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 297 RNLCDIKNYSLIKNV 253
           R+LCD++ Y+L++ +
Sbjct: 307 RDLCDVQRYNLLETI 321


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 512 KIHFNTKVIYLHYLVTXSLQGHYRSIY 432
           ++HF T    + YL+  SL+G  R  Y
Sbjct: 203 ELHFTTDHPSVAYLLVGSLKGIARQFY 229


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 527 RDRRNKIHFN-TKVIYLHYLVTXSLQGHYRSIYLYFHIINYNLI 399
           RDR  +     TK+I  +     +   +Y S  LY++IIN   I
Sbjct: 290 RDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQI 333


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 527 RDRRNKIHFN-TKVIYLHYLVTXSLQGHYRSIYLYFHIINYNLI 399
           RDR  +     TK+I  +     +   +Y S  LY++IIN   I
Sbjct: 301 RDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQI 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,915
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)