Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e17
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    72   6e-14
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   2.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.2  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   7.3  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   9.7  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   9.7  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -2

Query: 660 AVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLM 502
           AVAC+D+G Y+R YP G+ +I + G KQR+M L+SH DP VR+EAL  VQ LM
Sbjct: 387 AVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLLM 439


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 529 FVTYIRIVVTQEVHDTLFTTKLFDDVFAA 615
           ++TY+R +   E  D  F  +LFDDV  A
Sbjct: 256 YMTYVRSLEFDEEPDYAFLQELFDDVLRA 284


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 493 VVNHKFLHGEQGFVTYIRIVVTQEVHDTLFTTK-LFDDVFAARIVAHIFSDVIASD 657
           VV   ++H  + F+  I+  +TQ ++  + T+K LF  V  ++I      +++A D
Sbjct: 317 VVKELYVHVSRRFMLRIKAAITQMIYKKVLTSKTLFVAVDGSKINLDYVYNLLAKD 372


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/67 (25%), Positives = 24/67 (35%)
 Frame = -2

Query: 654 ACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMVHNWEYLGK 475
           A   +G  V        II   G       LLSH   N+R EA   +  +   N + +  
Sbjct: 310 ALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQA 369

Query: 474 QLEKEQI 454
            +E   I
Sbjct: 370 IIESNLI 376


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 308 LWFIKLNQT*KVDCLIKNTSIEVNIV 231
           LW I L Q    DCL+ N S+ V+++
Sbjct: 371 LWSIDLEQISPSDCLLDNYSLFVDLL 396


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   HINKWQLFNISLLNLHHLHDLTEC 72
           H  +W  F+   LNLH L+++T C
Sbjct: 74  HTGQWS-FSCRRLNLHLLNEITTC 96


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 ISEWLTLKLKYNIYFN*CVFNQAIYFLCLIK 293
           +S +LTLK K  IYF  C+ N   Y+ C ++
Sbjct: 541 VSFFLTLKGKKFIYFRICITN---YYRCNVR 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,615
Number of Sequences: 5004
Number of extensions: 50664
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)