Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e16
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.5  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   6.1  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    25   8.1  

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 305 CNYTKIRALHNMQSLCHLICRRTN-SDSYPTPLISSMNVSIIGFLGFNKSKRYKNYLSSI 481
           C    +     ++S+C L+C R N   + P  +   +   ++ FL   K+   ++ LS+ 
Sbjct: 714 CGTLHVNKSDEIRSICPLLCERANLPKNTPLNIYEEIKPGMVDFLRLEKTFT-QSELSTG 772

Query: 482 K*ICF 496
             ICF
Sbjct: 773 DIICF 777


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 164 HSLNFNC*WVSIYFLKSINSFKFDKSIQNIHFW 262
           H LNF   W     +++INSF  D + +    W
Sbjct: 292 HYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCW 324


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 50  KNETDNHGYRNKKNYQHIVQNYLFY*RL 133
           K+ET +      KNYQH++  Y +  RL
Sbjct: 99  KSETYSEQVSLPKNYQHLMDGYYYLDRL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,986
Number of Sequences: 5004
Number of extensions: 49872
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)