Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e16
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.7  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 53  NETDNHGYRNKKNYQHIVQNYLFY*RLY 136
           +  +N+   N  NY +   NY  Y +LY
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYNNYKKLY 118


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 305 CNYTKIRALHNMQSLCHLICRRTNSDSYPTPLISSMNVSIIGFLGFNKSKRYKNYLSS 478
           CN  +       Q+  H    +T+S   PTP  + + VS I  +G  +    +N   S
Sbjct: 355 CNTLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCES 412


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 YVLVIFLISITMIICLVLLFYVHTFMSLYNY 11
           +V  IF+ +  + +  ++LFY     S+ N+
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 59  TDNHGYRNKKNYQHIVQNY 115
           ++N+ Y N  NY +   NY
Sbjct: 86  SNNYNYSNYNNYNNNYNNY 104


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 103 YVLVIFLISITMIICLVLLFYVHTFMSLYNY 11
           +V  IF+ +  + +  ++LFY     S+ N+
Sbjct: 220 FVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,412
Number of Sequences: 438
Number of extensions: 3813
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)