Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e15
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 29 3.1
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 29 4.1
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 29 4.1
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 29 4.1
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 29 4.1
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 28 5.4
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 28 5.4
08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679... 27 9.4
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = -2
Query: 629 KMKLKSTDRSVKGQFKEFEAKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
K K+ + +KG+ E + + TR+ AAK+DAETKV + + + ++EA +K +
Sbjct: 197 KAKVDVAEERMKGEVGAKEREGL-TRQN-AAKVDAETKV-VSVRQQGIGLREEAKVKAEV 253
Query: 449 NLVYDIKPELHI 414
VY+ + E I
Sbjct: 254 Q-VYENEREAEI 264
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 608 DRSVKGQFKEFEAKHM--GTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
D GQ KEFE K + T+EG+ + K + EE+ + + + VIK+VL
Sbjct: 245 DEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCK-VIKEVL 298
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 608 DRSVKGQFKEFEAKHM--GTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
D GQ KEFE K + T+EG+ + K + EE+ + + + VIK+VL
Sbjct: 499 DEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCK-VIKEVL 552
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 608 DRSVKGQFKEFEAKHM--GTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
D GQ KEFE K + T+EG+ + K + EE+ + + + VIK+VL
Sbjct: 499 DEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCK-VIKEVL 552
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 608 DRSVKGQFKEFEAKHM--GTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
D GQ KEFE K + T+EG+ + K + EE+ + + + VIK+VL
Sbjct: 499 DEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCK-VIKEVL 552
>02_05_1056 -
33804717-33804871,33805352-33805418,33805508-33805576,
33806414-33806548,33806609-33806680,33807281-33807375,
33807778-33807859,33807949-33807999,33808107-33808187,
33808534-33808575,33808705-33808803,33809044-33809115,
33809166-33809270
Length = 374
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 287 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 138
C Q FLE + + ++ R + K++F QV ++N L TI SV +R
Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLTQVA-DLKNSLNTINSVAEEVR 152
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -2
Query: 632 LKMKLKSTDRSVKGQFKEFEAKHMGTREGVAAKIDAETKVKIEE---MNKMVQTQK--EA 468
LK +++ D+++ E EAK G + ++ K+D + I+E MN +T K E
Sbjct: 270 LKSEIQEMDKNISNLAAEKEAKLGGEMKTLSEKVDKLSHALIKETSVMNNQEETIKSEEK 329
Query: 467 VIKDVLNLVYDIK 429
+ +L + DIK
Sbjct: 330 GAEKILKNIEDIK 342
>08_02_1039 -
23866743-23866862,23866985-23867266,23867868-23867966,
23868595-23868903
Length = 269
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 69 HTTSSNIQVDYISYFFSYLNFKLS*RILNTWNGTELISHTINYLAK 206
HTTS Y F S+ + + + ++T+NGT+L+ +IN + K
Sbjct: 199 HTTSPRRSAGY--GFVSFSSKEAAEAAISTFNGTKLMGRSINVMFK 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,288,906
Number of Sequences: 37544
Number of extensions: 223017
Number of successful extensions: 484
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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