Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e15
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    60   2e-09
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    30   1.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    30   1.2  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/65 (44%), Positives = 43/65 (66%)
 Frame = -2

Query: 596 KGQFKEFEAKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELH 417
           + +FK FE +++GT+E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH
Sbjct: 52  EAEFKAFEQQYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELH 111

Query: 416 INYRL 402
            N  L
Sbjct: 112 HNLTL 116


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 629   KMKLKSTDRSVKGQFKEFEAKHMGTREGVA--AKIDAETKVKIEEMNKMVQTQKEAVIKD 456
             K KL++  +S  G+ K  E     +++ V   AK+DA+TK K  E    ++  +++  + 
Sbjct: 13347 KNKLEANKKSAAGKLKIEEESAAKSKQTVEEQAKLDAQTKAKTAEKQTKLEKDEKSTKES 13406

Query: 455   VLNLVYDIKPE 423
                   D KP+
Sbjct: 13407 ESKETVDEKPK 13417


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 629   KMKLKSTDRSVKGQFKEFEAKHMGTREGVA--AKIDAETKVKIEEMNKMVQTQKEAVIKD 456
             K KL++  +S  G+ K  E     +++ V   AK+DA+TK K  E    ++  +++  + 
Sbjct: 13347 KNKLEANKKSAAGKLKIEEESAAKSKQTVEEQAKLDAQTKAKTAEKQTKLEKDEKSTKES 13406

Query: 455   VLNLVYDIKPE 423
                   D KP+
Sbjct: 13407 ESKETVDEKPK 13417


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 156 TWNGTELISHTINYLAKKLHFDISFSAPCCVFF*LSRLQEN 278
           TW+  ELIS   NY  K +  +I   A  C+F+ L +L  N
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTN 363


>Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical
           protein W01B6.5 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -2

Query: 629 KMKLKSTDRSVKGQFKEFEAKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVL 450
           KMKLKST ++V+   K      +  RE V   +     +++ +   ++++   AV+K+ L
Sbjct: 286 KMKLKSTKKTVEVAVKMLRNAEVVIREQVGELLHEARVMRMMDHKNVLRSYGIAVLKEPL 345

Query: 449 NLVYDI 432
            L+ ++
Sbjct: 346 YLMTEM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,339,773
Number of Sequences: 27780
Number of extensions: 225683
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)