Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e14
(220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu... 38 2e-04
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 0.78
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 1.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 3.1
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 23 4.1
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 23 4.1
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 23 4.1
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 23 5.5
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 23 5.5
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 23 7.2
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 7.2
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 22 9.6
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 22 9.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 22 9.6
>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 85
Score = 37.5 bits (83), Expect = 2e-04
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -3
Query: 185 STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 21
ST+ F+R S+F + FF + F++ + S+++ N G W ++K ++ N
Sbjct: 22 STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 0.78
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 97 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR 216
SN S+K VPP+ + T R D+TD FSR
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSR 494
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 158 RTSTFALAVAGGTFFFERT 102
R ST A A GTFFF R+
Sbjct: 10 RCSTALSAAAAGTFFFRRS 28
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 210 ENFQNVRVVYIKSYCFQTYIYVCFGCCRRNV 118
E ++ R I ++ + +Y+ F CRRN+
Sbjct: 88 EVYKEYRDFMISTFRLNSKVYLTFTACRRNL 118
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 158 RTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQ 3
+T F++A AG + F+ F ++ + + N G ++I KY + NVQ
Sbjct: 9 QTGRFSVA-AGPSVRFQAGFLAANRQVRFSSNHGVSLEEINTKYNDFFSNVQ 59
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 98 ELVSQSIFENLNKGKLWKDIKH 33
E+ +++I++ LNK ++ K+ KH
Sbjct: 621 EIYNETIYDLLNKAEMLKNPKH 642
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 210 ENFQNVRVVYIKSYCFQTY 154
+ F V +VYI S+CF Y
Sbjct: 204 KEFSEVDIVYICSFCFCYY 222
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 61 LLRFSNID*DTNSNVLSKKNVPPATAKANV 150
LL+ N+D NS LSK++ P+ A V
Sbjct: 37 LLKPDNVDKPANSIPLSKRSTSPSYAPYTV 66
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 88 LNRYLKTSTKENYGRTSSTNM 26
+N Y TS E G SSTN+
Sbjct: 28 VNEYSSTSKFETLGNQSSTNL 48
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 160 LKTVRFNVDHTDILKI 207
LK+ FN+DH IL++
Sbjct: 90 LKSETFNLDHVKILRV 105
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 148 RLLWLLPEERSSLKEHLN*CLNRYLKTSTKENYGRTSST 32
+L+WL E SL + L+ TKE++ S++
Sbjct: 278 KLMWLADEIERSLPQELDFTREAKNSIETKEHFAHLSTS 316
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 97 SNVLSKKNVPPATAKANV 150
SN+ +KKN+ P +K++V
Sbjct: 140 SNIFAKKNLFPKVSKSDV 157
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -3
Query: 98 ELVSQSIFENLNKGKLWKDIKHKYEN 21
ELV + ++ K ++W+ + +YE+
Sbjct: 403 ELVFEGLYAYDTKNRIWEQLAVRYED 428
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 91 TNSNVLSKKNVPPA 132
T NVL+ +NVPPA
Sbjct: 290 TLMNVLASQNVPPA 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 939,103
Number of Sequences: 5004
Number of extensions: 15774
Number of successful extensions: 74
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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