Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e14
         (220 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017783-3|AAD28637.1|   55|Drosophila melanogaster ubiquinol-cy...    74   3e-14
AE013599-1580|AAF58459.1|   55|Drosophila melanogaster CG8764-PA...    74   3e-14
AY071727-1|AAL49349.1|   55|Drosophila melanogaster RH44662p pro...    72   1e-13
AY119564-1|AAM50218.1|  539|Drosophila melanogaster HL01062p pro...    28   1.5  
AE014296-2203|AAN11864.1|  471|Drosophila melanogaster CG10960-P...    28   1.5  
AE014296-2202|AAN11863.1|  471|Drosophila melanogaster CG10960-P...    28   1.5  
AE014296-2201|AAF49874.1|  539|Drosophila melanogaster CG10960-P...    28   1.5  
AY069348-1|AAL39493.1|  346|Drosophila melanogaster LD05623p pro...    26   8.2  
AE013599-15|EAA45984.1|  346|Drosophila melanogaster CG40293-PA,...    26   8.2  

>AF017783-3|AAD28637.1|   55|Drosophila melanogaster
           ubiquinol-cytochrome C reductasecomplex protein.
          Length = 55

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = -3

Query: 170 TVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYE 24
           T+FKRTST+A+A+    FFFER  ++ S +IFE +NKGKLWKDIK KYE
Sbjct: 7   TLFKRTSTYAVAIIASAFFFERALDVTSVAIFEGINKGKLWKDIKGKYE 55


>AE013599-1580|AAF58459.1|   55|Drosophila melanogaster CG8764-PA
           protein.
          Length = 55

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 31/49 (63%), Positives = 39/49 (79%)
 Frame = -3

Query: 170 TVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYE 24
           T+FKRTST+A+A+    FFFER  ++ S +IFE +NKGKLWKDIK KYE
Sbjct: 7   TLFKRTSTYAVAIIASAFFFERALDVTSVAIFEGINKGKLWKDIKGKYE 55


>AY071727-1|AAL49349.1|   55|Drosophila melanogaster RH44662p
           protein.
          Length = 55

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 30/49 (61%), Positives = 39/49 (79%)
 Frame = -3

Query: 170 TVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYE 24
           T+FKR ST+A+A+    FFFER  ++ S +IFE++NKGKLWKDIK KYE
Sbjct: 7   TLFKRASTYAVAIIASAFFFERALDVTSVAIFESINKGKLWKDIKGKYE 55


>AY119564-1|AAM50218.1|  539|Drosophila melanogaster HL01062p
           protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 209 KIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFER 105
           K  K++VW+ LNR V ++    ALA++ G  FF++
Sbjct: 305 KANKVNVWAALNRPVTRK----ALAISMGLMFFQQ 335


>AE014296-2203|AAN11864.1|  471|Drosophila melanogaster CG10960-PC,
           isoform C protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 209 KIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFER 105
           K  K++VW+ LNR V ++    ALA++ G  FF++
Sbjct: 237 KANKVNVWAALNRPVTRK----ALAISMGLMFFQQ 267


>AE014296-2202|AAN11863.1|  471|Drosophila melanogaster CG10960-PA,
           isoform A protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 209 KIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFER 105
           K  K++VW+ LNR V ++    ALA++ G  FF++
Sbjct: 237 KANKVNVWAALNRPVTRK----ALAISMGLMFFQQ 267


>AE014296-2201|AAF49874.1|  539|Drosophila melanogaster CG10960-PB,
           isoform B protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 209 KIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFER 105
           K  K++VW+ LNR V ++    ALA++ G  FF++
Sbjct: 305 KANKVNVWAALNRPVTRK----ALAISMGLMFFQQ 335


>AY069348-1|AAL39493.1|  346|Drosophila melanogaster LD05623p
           protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 177 KSYCFQTYIYVCFGCCRRNVLL*KNI 100
           K Y + TY ++CFG C   VLL KN+
Sbjct: 77  KQYVYLTYKFMCFGNC--EVLL-KNV 99


>AE013599-15|EAA45984.1|  346|Drosophila melanogaster CG40293-PA,
           isoform A protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 177 KSYCFQTYIYVCFGCCRRNVLL*KNI 100
           K Y + TY ++CFG C   VLL KN+
Sbjct: 77  KQYVYLTYKFMCFGNC--EVLL-KNV 99


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,069
Number of Sequences: 53049
Number of extensions: 150663
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 24,988,368
effective HSP length: 52
effective length of database: 22,229,820
effective search space used: 444596400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)