Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e14
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine re...    26   4.2  
AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine re...    26   4.2  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>Z34800-1|CAA84321.2|  420|Caenorhabditis elegans Hypothetical
           protein F45H7.1 protein.
          Length = 420

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 167 VFKRTSTFALAVAGGTFFF 111
           V KR++TF+L +AG  FFF
Sbjct: 401 VAKRSNTFSLQLAGEFFFF 419


>AF067211-6|AAC16989.1|  308|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform a protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 207 NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 115
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 268 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 297


>AF067211-5|AAW88420.1|  329|Caenorhabditis elegans Serpentine
           receptor, class z protein85, isoform b protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 207 NFQNVRVVYIKSYCFQTYIYVCFGCCRRNVL 115
           N  N++++ + S+ F+ +  V FGC  RNV+
Sbjct: 289 NRNNLKIL-LTSFNFKKFFAVIFGCTGRNVV 318


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 210 ENFQNVRVV-YIKSYCFQTYIYVCFGCCRRNVLL*KN 103
           E   N+ VV YI ++ F TY+ + F CC   + L KN
Sbjct: 173 ETRHNIYVVKYILAFLF-TYLQMHFLCCNSKIDLPKN 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,173,087
Number of Sequences: 27780
Number of extensions: 86388
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)