Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e13
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757           50   1e-06
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    27   8.7  
01_06_0441 + 29417004-29417114,29417213-29417311,29417405-294175...    27   8.7  

>05_01_0597 + 5363049-5363429,5363559-5363715,5364390-5364757
          Length = 301

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
 Frame = -3

Query: 474 LMITGVLWGCTNPFIRQGT----RGLRDIK--SDTLVGQVRAEIWFLLSNWKYVVPWLVN 313
           ++  G++WG TN  +R+G       LR +   S ++ G +R     LL+ W+Y  P+ VN
Sbjct: 10  MVAVGLVWGTTNALMRRGALVWDHRLRSLPATSSSVTGVLRRWAELLLT-WQYSAPFAVN 68

Query: 312 QAGSLVYLAAVQRAPLSVAVPVAS 241
            A S  + + +  AP+SVAVPV +
Sbjct: 69  LAASAAFFSLLGAAPISVAVPVTN 92


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 236 TPLATGTATDSGALCTAARYTRDPA 310
           TP ++G+A   G  C AARY    A
Sbjct: 54  TPASSGSAESGGRTCAAARYQHGQA 78


>01_06_0441 +
           29417004-29417114,29417213-29417311,29417405-29417534,
           29417673-29417765,29417892-29417982,29418166-29418222,
           29419200-29419320,29420183-29420331,29420675-29420891
          Length = 355

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 345 NWKYVVPWLVNQAGSLVYLAAVQRAPLSVAVPVA 244
           N  ++  +L++  G+ + L A+ +AP+SV  P+A
Sbjct: 45  NRLWISGFLMDMCGAALMLTALSQAPVSVVQPIA 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,731
Number of Sequences: 37544
Number of extensions: 172276
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)