Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e13
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123 WNQTSAKV*GVSEPIT-PGQSLLGHR*LIKKVYYISTNYQKI 1
           WN+    V GVS  ++ P   +LGHR    ++   + NY ++
Sbjct: 170 WNEGPNSV-GVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRL 210


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 123 WNQTSAKV*GVSEPIT-PGQSLLGHR*LIKKVYYISTNYQKI 1
           WN+    V GVS  ++ P   +LGHR    ++   + NY ++
Sbjct: 109 WNEGPNSV-GVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRL 149


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 311 WFTSQGTTYFQLLSRN 358
           W+  +G  YF+LLS N
Sbjct: 71  WWDYKGIVYFELLSPN 86


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 363 IWFLLSNWKYVVPW 322
           I F++  W Y +PW
Sbjct: 163 ILFIVLIWTYTIPW 176


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 311 WFTSQGTTYFQLLSRN 358
           W+  +G  YF+LL  N
Sbjct: 72  WWDHKGIVYFELLPPN 87


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 311 WFTSQGTTYFQLLSRN 358
           W+  +G  YF+LL  N
Sbjct: 193 WWDYKGIVYFELLPPN 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,596
Number of Sequences: 438
Number of extensions: 1762
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)