Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13e11
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   106   3e-24

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  106 bits (254), Expect = 3e-24
 Identities = 59/138 (42%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
 Frame = -1

Query: 568 LLAVPTGIXXXR*LATIHGTRSN-GNPNIL*XXGFXXXFTVGGLTGVXLANSSIDXXXHD 392
           ++A+PTGI     LAT+ G         +L   GF   FT+GGLTGV L+NS +D   HD
Sbjct: 317 VIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHD 376

Query: 391 TYYVVXXVHXVLXXGAVXAXIGGXIX*YPLFTGLSLNSYILKIQFSTISIGVNXTFXPQX 212
           TY+VV   H VL  GA+    G      P   GL  N  +  IQF  + IGVN  F PQ 
Sbjct: 377 TYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQH 435

Query: 211 XLGXAGIPRRXSDYPDSY 158
            LG  G+PRR  DYP+++
Sbjct: 436 FLGLNGMPRRIPDYPEAF 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,165
Number of Sequences: 5004
Number of extensions: 17355
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)