Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e10
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 35 0.075
06_01_1179 + 10137652-10138038 32 0.53
07_01_0408 - 3137705-3138017,3139361-3139371,3140693-3140770,314... 32 0.70
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.8
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 3.8
12_01_0373 + 2897874-2898911 29 6.6
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 28 8.7
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 35.1 bits (77), Expect = 0.075
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -2
Query: 676 TIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEV 497
T A+ V V ES+ AS+ E D+ +V K + +V + ES +S V
Sbjct: 494 TEAASTEFVTAVVEESAPTASSVETSEDDSTVDDKLVEPTASVSATEA-ESKEDSSEGSV 552
Query: 496 INDEVSVGSKTIVAAP--AVVVNDPIESSTGASATEVINDEALV 371
+ E SV + +AP +V + P ++ ASA E+I D V
Sbjct: 553 ASTE-SVTAVVEESAPVSSVAIEVPAPEASEASAQEIIEDSTTV 595
>06_01_1179 + 10137652-10138038
Length = 128
Score = 32.3 bits (70), Expect = 0.53
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +3
Query: 369 LTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS-LITSVALAPVEDSITSFT 545
+ A++ I++ A AP E + + AAT PT S+ A AP TS
Sbjct: 12 ILTAAAAISAAAQAPAESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTTVATS-- 69
Query: 546 TTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGA 665
AG + + PT +++++ VA P + + F + AGA
Sbjct: 70 APAGGDEVSIPPTPFATVVSPVADGPADAADADF-SGAGA 108
>07_01_0408 -
3137705-3138017,3139361-3139371,3140693-3140770,
3141105-3141206,3141309-3141380,3141484-3141558
Length = 216
Score = 31.9 bits (69), Expect = 0.70
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 474 PTDTSSLITSVALAPVEDSITSFTTT-AGAATIVLEPTDTSSLITSVALAPVEDSITSFT 650
P ++ S+ L PV T F++ A AA P +SS +T P++ + ++ T
Sbjct: 28 PAAATAAAISLHLVPVIRGATPFSSAVAAAAAAASTPARSSSALTQTLSFPIQATRSAAT 87
Query: 651 TTAGAATIVLGTHRY 695
+T A+ L RY
Sbjct: 88 STPPWASSALAQPRY 102
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 673 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDVIESSTGASATEVI 494
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 493 NDEV 482
++E+
Sbjct: 333 SEEI 336
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 568 IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 389
+ A A + DV+ +G V+ND+ G ++ VVV + G A E+
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332
Query: 388 NDE 380
++E
Sbjct: 333 SEE 335
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = -2
Query: 688 WVPKTIVAAPAVVVNDVIESSTGASA-TEVINDEVSVGSKTIVAAPAVVVNDVIESSTGA 512
W+ K ++A V ++ + TE + +++ V I A IESS +
Sbjct: 143 WIAKAVIANILSRVRSLLHDNFSLQKDTEKMLNDLEVALPRIEAVIEAAERRSIESSALS 202
Query: 511 SATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEAL 374
+ + + D VS + A + D +ES + SA +AL
Sbjct: 203 TWLQQLKDAVSHAGDVVDDFEAKTIKDQVESKSKVSAKAYSTVKAL 248
>12_01_0373 + 2897874-2898911
Length = 345
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 387 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 563
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 492 LITSVALAPVEDSITSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 668
L+ ++A P S + TTT AAT T S+ TS + TS T A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 277 YSNLVALRYLKLLVQPQPRLL*WFLL 354
Y+N AL+YL +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,090
Number of Sequences: 37544
Number of extensions: 313284
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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