Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13e06
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 1.4
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 1.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 2.4
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 3.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 3.2
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 25 3.2
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 24 5.6
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 23 7.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 23 7.5
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 7.5
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 23 7.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 23 9.9
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 23 9.9
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 23 9.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 23 9.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 23 9.9
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 23 9.9
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 162 EAPWLRCLSSLCKLNQLASKRSFC 233
+AP L LS++C + + KR FC
Sbjct: 967 DAPALSLLSAVCAYDYASDKRKFC 990
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 1.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 222 RSFCYCSC 245
RSFCYCSC
Sbjct: 158 RSFCYCSC 165
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 115 RISRQSHTLGQRTTCTPPESCSKVKK 38
++ ++S +T TPP+ CS +KK
Sbjct: 36 QMKKESLAASVKTPSTPPKECSHLKK 61
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 122 NVTNLTSESHLGPTDDLHTSRKLFQS 45
+V+ L+S SHL PT +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 171 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 64
K + S + FR RD+ + P +N P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 3.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +1
Query: 25 WLTIPSSLWNSFLEVCR 75
WL+IP+S W++F + +
Sbjct: 507 WLSIPASRWSTFYDASK 523
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 122 NVTNLTSESHLGPTDDLHTSRKLFQSEEGI 33
++TNLT D L T LF++E+G+
Sbjct: 573 SLTNLTFNDRCALVDLLITKLALFEAEKGV 602
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 109 SRQSHTLGQRTTCT 68
SRQS TL RT CT
Sbjct: 132 SRQSGTLNNRTLCT 145
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 7.5
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 172 QGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKE*LTK 23
Q + K I SR + R+ + S RTT TPP S S K+ L K
Sbjct: 322 QELPSLNKLSIQSRAFKKMRLPKIS-----RTTDTPPASTSNSNKKNLDK 366
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 42 RRNS*PNMHENHQ 4
RR PN+H+NHQ
Sbjct: 127 RRKRHPNLHKNHQ 139
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.4 bits (48), Expect = 7.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 126 TPLLEILALVTCEAPWLRCLSSLCKLN 206
TP + + VT + PWL L CK N
Sbjct: 207 TPGTILPSTVTVKTPWLSVLPFNCKKN 233
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 117 HVSTPLLEILALVTCEAPWLRCLSSLCKL 203
++ T + LV C AP + C SS C L
Sbjct: 761 NIGTIKASLEVLVKCIAPIIPCFSSECWL 789
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 240 NNNKMSAWRQAGLTYINYSNIAAKV 166
N N +SAW G Y+ N A +
Sbjct: 368 NRNYLSAWTLMGHEYVELKNTHAAI 392
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 88 PRCDSDVRFVTFQRLCSK 141
P CDS VR T R+C +
Sbjct: 31 PICDSHVRPTTLVRICDE 48
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 259 ENKSKQEQ*QNERLEASWFNLHKLLKHRSQGASQVTKARI 140
E+K + + ++L A+W KLL + +++ +ARI
Sbjct: 378 ESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTELEQARI 417
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 73 RSSVGPRCDSDVRFVTFQR 129
RSS+ P DS++R TF++
Sbjct: 21 RSSINPILDSELRDKTFEK 39
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 138 RAEALKRDESHVRVT 94
R EAL R +SH R+T
Sbjct: 45 RVEALDRQQSHSRIT 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,300
Number of Sequences: 5004
Number of extensions: 21568
Number of successful extensions: 82
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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